miRNA: 3'- -CACCG-GaUGCACC---UGCUUc---UGCCCGU- -5'
miRNA: 3'- caCCGGaUGCAcCUGCUuCUGCCCGU- -5'
miRNA: 3'- caCCGG-AugCaCCUGCUUCUGCCCGU- -5'
miRNA: 3'- caCCG--GAUGCACCUGCUUCuGCCCGU- -5'
miRNA: 3'- -CACCGGAUGCACCUGCUUCUGCCCGU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8182 | 5' | -57.3 | NC_001978.2 | + | 15781 | 0.69 | 0.33307 |
|
Target: 5'- cGUGGCgCaGCGUGGuacACGAAcaacACGGGCAc -3' miRNA: 3'- -CACCG-GaUGCACC---UGCUUc---UGCCCGU- -5' |
|||||||
| 8182 | 5' | -57.3 | NC_001978.2 | + | 29452 | 0.72 | 0.233122 |
|
Target: 5'- -aGGUCaGCGUcGGCGAcGACGGGCAc -3' miRNA: 3'- caCCGGaUGCAcCUGCUuCUGCCCGU- -5' |
|||||||
| 8182 | 5' | -57.3 | NC_001978.2 | + | 21614 | 0.77 | 0.107713 |
|
Target: 5'- -gGGCUgUugG-GGGCGGAGACGGGCGc -3' miRNA: 3'- caCCGG-AugCaCCUGCUUCUGCCCGU- -5' |
|||||||
| 8182 | 5' | -57.3 | NC_001978.2 | + | 15725 | 0.79 | 0.07408 |
|
Target: 5'- -cGGUcaCUAUGUGGGCGAAGuCGGGCGg -3' miRNA: 3'- caCCG--GAUGCACCUGCUUCuGCCCGU- -5' |
|||||||
| 8182 | 5' | -57.3 | NC_001978.2 | + | 19566 | 1.08 | 0.000497 |
|
Target: 5'- gGUGGCCUACGUGGACGAAGACGGGCAg -3' miRNA: 3'- -CACCGGAUGCACCUGCUUCUGCCCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home