miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8183 3' -53.2 NC_001978.2 + 39342 0.65 0.784388
Target:  5'- -uUCAgCGCGACCCgaucacgcuccgGCCGGuCG-AGCu -3'
miRNA:   3'- guAGUaGUGCUGGGa-----------CGGCU-GCuUCG- -5'
8183 3' -53.2 NC_001978.2 + 10547 0.66 0.776178
Target:  5'- gAUCAgga-GACCCggGCCGGUGAAGUu -3'
miRNA:   3'- gUAGUagugCUGGGa-CGGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 11033 0.66 0.776178
Target:  5'- aGUCGcCugGGCgCUGCgGACGucuccGGCg -3'
miRNA:   3'- gUAGUaGugCUGgGACGgCUGCu----UCG- -5'
8183 3' -53.2 NC_001978.2 + 2669 0.66 0.776178
Target:  5'- gCGUCGUCGCgccggaagaucGACCUUGCCGuugcaAUGguGCu -3'
miRNA:   3'- -GUAGUAGUG-----------CUGGGACGGC-----UGCuuCG- -5'
8183 3' -53.2 NC_001978.2 + 36423 0.66 0.759461
Target:  5'- -uUCAUCAUGGCgCUgagcgcugaagggacGuuGGCGAAGUa -3'
miRNA:   3'- guAGUAGUGCUGgGA---------------CggCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 30068 0.66 0.755225
Target:  5'- gCAUgGUgGCGcacGCUUUGCCGACuGGGCg -3'
miRNA:   3'- -GUAgUAgUGC---UGGGACGGCUGcUUCG- -5'
8183 3' -53.2 NC_001978.2 + 8112 0.66 0.755225
Target:  5'- -uUCAcgCACGGCCUuguucaauuccuUGUCG-CGGAGCg -3'
miRNA:   3'- guAGUa-GUGCUGGG------------ACGGCuGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 4344 0.66 0.752033
Target:  5'- cCGUCAUC-CGACgCgcgcucuucaagggUGCCGACGGcgaaacgaAGCu -3'
miRNA:   3'- -GUAGUAGuGCUGgG--------------ACGGCUGCU--------UCG- -5'
8183 3' -53.2 NC_001978.2 + 36550 0.66 0.744541
Target:  5'- uGUCGgcUCAUGACUggGUCGGCGuGGCa -3'
miRNA:   3'- gUAGU--AGUGCUGGgaCGGCUGCuUCG- -5'
8183 3' -53.2 NC_001978.2 + 8571 0.66 0.733737
Target:  5'- uGUCGUCAUGAagcgcaaguuCCCUgagaucgagcccGCCGACgucggGAAGCu -3'
miRNA:   3'- gUAGUAGUGCU----------GGGA------------CGGCUG-----CUUCG- -5'
8183 3' -53.2 NC_001978.2 + 26132 0.67 0.711817
Target:  5'- --gCAUCcuggGCGACCUugUGUCGACGuacGGCg -3'
miRNA:   3'- guaGUAG----UGCUGGG--ACGGCUGCu--UCG- -5'
8183 3' -53.2 NC_001978.2 + 35879 0.67 0.700726
Target:  5'- gGUCGUCAagaACCUUGCCGuCGucuucGGCg -3'
miRNA:   3'- gUAGUAGUgc-UGGGACGGCuGCu----UCG- -5'
8183 3' -53.2 NC_001978.2 + 30787 0.67 0.700726
Target:  5'- -uUCGUgACGACCgCaugGCCGAUucgcgcgaGAAGCa -3'
miRNA:   3'- guAGUAgUGCUGG-Ga--CGGCUG--------CUUCG- -5'
8183 3' -53.2 NC_001978.2 + 32161 0.67 0.700726
Target:  5'- gGUCAUCACGGCacgGUCGGcCGGaacGGCa -3'
miRNA:   3'- gUAGUAGUGCUGggaCGGCU-GCU---UCG- -5'
8183 3' -53.2 NC_001978.2 + 35140 0.67 0.678344
Target:  5'- uCGUCgGUCAguGCCCcGCCcagGACGGAGCa -3'
miRNA:   3'- -GUAG-UAGUgcUGGGaCGG---CUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 35714 0.67 0.678344
Target:  5'- --aCGaCACGGCCacgCUGCCGcgccauGCGAAGCc -3'
miRNA:   3'- guaGUaGUGCUGG---GACGGC------UGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 25327 0.68 0.655775
Target:  5'- ---aGUCG-GACCacuucagGCCGACGGAGCu -3'
miRNA:   3'- guagUAGUgCUGGga-----CGGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 9336 0.68 0.633113
Target:  5'- --gCAUgGCGAagaacGCCGACGAAGCg -3'
miRNA:   3'- guaGUAgUGCUggga-CGGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 37702 0.68 0.633113
Target:  5'- cCGUCGU-GCGcCCCUGggugaucuUCGACGGAGCc -3'
miRNA:   3'- -GUAGUAgUGCuGGGAC--------GGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 13047 0.68 0.633113
Target:  5'- aCGUUAUCGCGACgUUGCCcgucACG-GGCa -3'
miRNA:   3'- -GUAGUAGUGCUGgGACGGc---UGCuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.