miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8183 3' -53.2 NC_001978.2 + 13047 0.68 0.633113
Target:  5'- aCGUUAUCGCGACgUUGCCcgucACG-GGCa -3'
miRNA:   3'- -GUAGUAGUGCUGgGACGGc---UGCuUCG- -5'
8183 3' -53.2 NC_001978.2 + 32821 0.7 0.510499
Target:  5'- aCGUC-UCGCGugCgCUuCUGACGGAGCu -3'
miRNA:   3'- -GUAGuAGUGCugG-GAcGGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 22785 0.7 0.532237
Target:  5'- uCGUCGUCAUGAUCCUGaUUGGCauguGGCa -3'
miRNA:   3'- -GUAGUAGUGCUGGGAC-GGCUGcu--UCG- -5'
8183 3' -53.2 NC_001978.2 + 9267 0.7 0.543231
Target:  5'- --aCGUCGCGACgguCCUgGgCGACGAAGUu -3'
miRNA:   3'- guaGUAGUGCUG---GGA-CgGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 34542 0.69 0.554299
Target:  5'- ---gGUC-CGACCCUGCCgGACGGcuccGCu -3'
miRNA:   3'- guagUAGuGCUGGGACGG-CUGCUu---CG- -5'
8183 3' -53.2 NC_001978.2 + 8129 0.69 0.565431
Target:  5'- gGUCAcCGCGACCCgaaGUCGAgcAAGCg -3'
miRNA:   3'- gUAGUaGUGCUGGGa--CGGCUgcUUCG- -5'
8183 3' -53.2 NC_001978.2 + 4638 0.69 0.599139
Target:  5'- ------gACGACCCUGa-GACGggGCu -3'
miRNA:   3'- guaguagUGCUGGGACggCUGCuuCG- -5'
8183 3' -53.2 NC_001978.2 + 16099 0.68 0.621776
Target:  5'- --aUAUCACccuuGCCgCUGCCGACGucggGGCg -3'
miRNA:   3'- guaGUAGUGc---UGG-GACGGCUGCu---UCG- -5'
8183 3' -53.2 NC_001978.2 + 9336 0.68 0.633113
Target:  5'- --gCAUgGCGAagaacGCCGACGAAGCg -3'
miRNA:   3'- guaGUAgUGCUggga-CGGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 12762 0.71 0.489141
Target:  5'- --aCGUgGCGACgCUGCCGACc-GGCa -3'
miRNA:   3'- guaGUAgUGCUGgGACGGCUGcuUCG- -5'
8183 3' -53.2 NC_001978.2 + 15467 0.71 0.489141
Target:  5'- --aCAacUCcguCGACCUUGCCGACGucGCc -3'
miRNA:   3'- guaGU--AGu--GCUGGGACGGCUGCuuCG- -5'
8183 3' -53.2 NC_001978.2 + 6724 0.71 0.46821
Target:  5'- cCGUUGUCACGACgCCgggcaauccgGUCGACGcuGAGCg -3'
miRNA:   3'- -GUAGUAGUGCUG-GGa---------CGGCUGC--UUCG- -5'
8183 3' -53.2 NC_001978.2 + 31277 0.77 0.204166
Target:  5'- -uUCGUCACGGCCaacGCCGACGGcgacgugaucAGCa -3'
miRNA:   3'- guAGUAGUGCUGGga-CGGCUGCU----------UCG- -5'
8183 3' -53.2 NC_001978.2 + 13710 0.74 0.336466
Target:  5'- --gCAUCGCugacaacGCCCuagacaUGCCGACGAAGCa -3'
miRNA:   3'- guaGUAGUGc------UGGG------ACGGCUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 18364 0.74 0.336466
Target:  5'- cCGUCGUCGuCGcCCUUGUCGGCGucGCu -3'
miRNA:   3'- -GUAGUAGU-GCuGGGACGGCUGCuuCG- -5'
8183 3' -53.2 NC_001978.2 + 2770 0.72 0.389514
Target:  5'- aAUUAUCGCGACCUggGaagaCGACGAAGg -3'
miRNA:   3'- gUAGUAGUGCUGGGa-Cg---GCUGCUUCg -5'
8183 3' -53.2 NC_001978.2 + 26027 0.72 0.418015
Target:  5'- --cCGUcCGCGACCgUGCCcagguugaGGCGGAGCa -3'
miRNA:   3'- guaGUA-GUGCUGGgACGG--------CUGCUUCG- -5'
8183 3' -53.2 NC_001978.2 + 29959 0.71 0.447748
Target:  5'- aGUCcgCcgACGACCUUGCCGACc-GGCu -3'
miRNA:   3'- gUAGuaG--UGCUGGGACGGCUGcuUCG- -5'
8183 3' -53.2 NC_001978.2 + 16265 0.71 0.447748
Target:  5'- ---gGUCACGcuuACCgCUGCCGACGuuggGGCg -3'
miRNA:   3'- guagUAGUGC---UGG-GACGGCUGCu---UCG- -5'
8183 3' -53.2 NC_001978.2 + 4050 0.71 0.46821
Target:  5'- --aCAUgACGcCCCUGcCCGACGGauugGGCg -3'
miRNA:   3'- guaGUAgUGCuGGGAC-GGCUGCU----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.