miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8183 5' -53.3 NC_001978.2 + 30229 0.66 0.774498
Target:  5'- cACGUagCGCUCGAacgcgucaaCGGUCGuguccGuGAAGCg -3'
miRNA:   3'- -UGCGaaGCGAGCU---------GCCAGUu----C-CUUCG- -5'
8183 5' -53.3 NC_001978.2 + 33453 0.66 0.774498
Target:  5'- cGCGCUgagcCGCauacaCGAacaGaUCAAGGAAGCa -3'
miRNA:   3'- -UGCGAa---GCGa----GCUg--CcAGUUCCUUCG- -5'
8183 5' -53.3 NC_001978.2 + 13301 0.66 0.74277
Target:  5'- aGCGUgagCGUUcCGGCGG-CAAGGucGGCc -3'
miRNA:   3'- -UGCGaa-GCGA-GCUGCCaGUUCCu-UCG- -5'
8183 5' -53.3 NC_001978.2 + 19470 0.66 0.74277
Target:  5'- cGCGCUcCGcCUCaGCGG-CAAGGAucuucGCg -3'
miRNA:   3'- -UGCGAaGC-GAGcUGCCaGUUCCUu----CG- -5'
8183 5' -53.3 NC_001978.2 + 1985 0.66 0.74277
Target:  5'- gACGCUUU--UCuACGGUCcuGGggGCc -3'
miRNA:   3'- -UGCGAAGcgAGcUGCCAGuuCCuuCG- -5'
8183 5' -53.3 NC_001978.2 + 2915 0.66 0.73194
Target:  5'- -gGCacuccccagCGCUCGACGG-CAuuGAGGCg -3'
miRNA:   3'- ugCGaa-------GCGAGCUGCCaGUucCUUCG- -5'
8183 5' -53.3 NC_001978.2 + 11551 0.66 0.73194
Target:  5'- gACGCUgccCGCacggUGACGGUCc--GGAGCu -3'
miRNA:   3'- -UGCGAa--GCGa---GCUGCCAGuucCUUCG- -5'
8183 5' -53.3 NC_001978.2 + 38683 0.66 0.73194
Target:  5'- cGCGCUucUCGCgccUGAaGGUCAuGGAcGCg -3'
miRNA:   3'- -UGCGA--AGCGa--GCUgCCAGUuCCUuCG- -5'
8183 5' -53.3 NC_001978.2 + 39839 0.66 0.73194
Target:  5'- cGCGCggcaggCGCguaCGACGGaccCGuuggcAGGAAGCa -3'
miRNA:   3'- -UGCGaa----GCGa--GCUGCCa--GU-----UCCUUCG- -5'
8183 5' -53.3 NC_001978.2 + 20759 0.67 0.709972
Target:  5'- cCGCg-CGUUCGACGGUCc-GGAccGCa -3'
miRNA:   3'- uGCGaaGCGAGCUGCCAGuuCCUu-CG- -5'
8183 5' -53.3 NC_001978.2 + 30406 0.67 0.709972
Target:  5'- cCGUgUCGCUCGACaaGGUCAcGucGGCu -3'
miRNA:   3'- uGCGaAGCGAGCUG--CCAGUuCcuUCG- -5'
8183 5' -53.3 NC_001978.2 + 978 0.67 0.698861
Target:  5'- cGCGCUUC--UCGGCGGgagUCuggcGGggGCg -3'
miRNA:   3'- -UGCGAAGcgAGCUGCC---AGuu--CCuuCG- -5'
8183 5' -53.3 NC_001978.2 + 38495 0.67 0.68768
Target:  5'- cGCGCUcgCGCgacUGACGGUCGu--AAGCa -3'
miRNA:   3'- -UGCGAa-GCGa--GCUGCCAGUuccUUCG- -5'
8183 5' -53.3 NC_001978.2 + 28273 0.67 0.68768
Target:  5'- gGCGCgcgUGUUCGGCG-UCAAGGcacggguucAGGCg -3'
miRNA:   3'- -UGCGaa-GCGAGCUGCcAGUUCC---------UUCG- -5'
8183 5' -53.3 NC_001978.2 + 9665 0.67 0.685437
Target:  5'- gACGCccuagacaagaCGCUUGACGGgcuccggaagaUCAAGGAcccGGCg -3'
miRNA:   3'- -UGCGaa---------GCGAGCUGCC-----------AGUUCCU---UCG- -5'
8183 5' -53.3 NC_001978.2 + 25461 0.68 0.607354
Target:  5'- -gGCUUCGCUacuccccCGACGGgCAGGGuuaugacuGGCc -3'
miRNA:   3'- ugCGAAGCGA-------GCUGCCaGUUCCu-------UCG- -5'
8183 5' -53.3 NC_001978.2 + 36282 0.69 0.597174
Target:  5'- uACGUcaguugaggauuUUUGCUCuucuGACGGUCAguaAGGGAGUc -3'
miRNA:   3'- -UGCG------------AAGCGAG----CUGCCAGU---UCCUUCG- -5'
8183 5' -53.3 NC_001978.2 + 18556 0.69 0.573533
Target:  5'- --cCUUCGCUCGACGugcuuagcaugccGUgAAGGGAGUc -3'
miRNA:   3'- ugcGAAGCGAGCUGC-------------CAgUUCCUUCG- -5'
8183 5' -53.3 NC_001978.2 + 4601 0.69 0.552336
Target:  5'- cCGCgu-GCUCGACGGU--GGGcAGCg -3'
miRNA:   3'- uGCGaagCGAGCUGCCAguUCCuUCG- -5'
8183 5' -53.3 NC_001978.2 + 16397 0.69 0.552336
Target:  5'- gGCGCUUCGCg-GA--GUCGAGcGggGCa -3'
miRNA:   3'- -UGCGAAGCGagCUgcCAGUUC-CuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.