Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 33824 | 0.7 | 0.519379 |
|
Target: 5'- gACGUgacgUCGCUCGACuGUCGGGccGAcGGCg -3' miRNA: 3'- -UGCGa---AGCGAGCUGcCAGUUC--CU-UCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 21171 | 0.7 | 0.508563 |
|
Target: 5'- aGCGCUUCGCgaa--GGUCAAGacggcgaacgaGAAGCg -3' miRNA: 3'- -UGCGAAGCGagcugCCAGUUC-----------CUUCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 33832 | 0.71 | 0.476717 |
|
Target: 5'- cACGCUUCGCggaaCGccuucACGGUCGAGcGAcccgacgacGGCa -3' miRNA: 3'- -UGCGAAGCGa---GC-----UGCCAGUUC-CU---------UCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 12330 | 0.71 | 0.456044 |
|
Target: 5'- cCGCUUCGC-CGACGGUCcc-GAcacGGCc -3' miRNA: 3'- uGCGAAGCGaGCUGCCAGuucCU---UCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 20377 | 0.71 | 0.435864 |
|
Target: 5'- -gGCUUC-CUUGACcGUCGAGcGAAGCg -3' miRNA: 3'- ugCGAAGcGAGCUGcCAGUUC-CUUCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 15622 | 0.72 | 0.397105 |
|
Target: 5'- cACGCgUUCaacgGCUCGACGGUUccGGcGGCu -3' miRNA: 3'- -UGCG-AAG----CGAGCUGCCAGuuCCuUCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 28638 | 0.74 | 0.294938 |
|
Target: 5'- cGCGCUUCGCUCGAaggacggcuuCGGcCAAcGGGuuaGGCu -3' miRNA: 3'- -UGCGAAGCGAGCU----------GCCaGUU-CCU---UCG- -5' |
|||||||
| 8183 | 5' | -53.3 | NC_001978.2 | + | 20309 | 1.11 | 0.00088 |
|
Target: 5'- cACGCUUCGCUCGACGGUCAAGGAAGCc -3' miRNA: 3'- -UGCGAAGCGAGCUGCCAGUUCCUUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home