Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8185 | 3' | -62.1 | NC_001978.2 | + | 1068 | 0.66 | 0.361108 |
Target: 5'- aCCCGGCGugCGGUaaaGCUCuucGCCccgGAg -3' miRNA: 3'- -GGGCCGCugGCCAga-CGGGc--UGGa--CU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 7105 | 0.66 | 0.360285 |
Target: 5'- gUCGGCuuccgGGCCGGUaugcagaCUGCCCG-CgCUGAc -3' miRNA: 3'- gGGCCG-----CUGGCCA-------GACGGGCuG-GACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 11214 | 0.66 | 0.352937 |
Target: 5'- gCCCGaCGuuCGGUC-GUCUGAUCUGAc -3' miRNA: 3'- -GGGCcGCugGCCAGaCGGGCUGGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 6024 | 0.66 | 0.352127 |
Target: 5'- gCCCGG-GGCgcgaagguucugaCGGUCacucccgcUGCCUGAUCUGAc -3' miRNA: 3'- -GGGCCgCUG-------------GCCAG--------ACGGGCUGGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 5433 | 0.66 | 0.33699 |
Target: 5'- uCCCGGC----GGUC-GCCCGACCcgUGAu -3' miRNA: 3'- -GGGCCGcuggCCAGaCGGGCUGG--ACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 9707 | 0.66 | 0.321575 |
Target: 5'- gUCCuucGCGACCGGUCcGCCCugggcaauGGCCUu- -3' miRNA: 3'- -GGGc--CGCUGGCCAGaCGGG--------CUGGAcu -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 22282 | 0.66 | 0.314067 |
Target: 5'- aCCCGacGCcgGACCGGUCcgggaaGCCUcACCUGAu -3' miRNA: 3'- -GGGC--CG--CUGGCCAGa-----CGGGcUGGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 19585 | 0.67 | 0.30017 |
Target: 5'- gUCGGCG-CCGGUCagcuccgugucgaacGUCCGGCCgUGAa -3' miRNA: 3'- gGGCCGCuGGCCAGa--------------CGGGCUGG-ACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 22637 | 0.67 | 0.299452 |
Target: 5'- uUCCGuGCGACCGG-CUuaCCGAUCa-- -3' miRNA: 3'- -GGGC-CGCUGGCCaGAcgGGCUGGacu -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 16730 | 0.67 | 0.278524 |
Target: 5'- -gCGGCaagcgcGCCGGUuucCUGCCCaGCCUGGg -3' miRNA: 3'- ggGCCGc-----UGGCCA---GACGGGcUGGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 24429 | 0.68 | 0.258141 |
Target: 5'- gCCgGGCGACaCGGUCUaucugaaGCCgGGCgccaCUGAg -3' miRNA: 3'- -GGgCCGCUG-GCCAGA-------CGGgCUG----GACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 20984 | 0.69 | 0.222732 |
Target: 5'- aCCCGGCGgucguACCGGgcaagCUccGUCCGGCCg-- -3' miRNA: 3'- -GGGCCGC-----UGGCCa----GA--CGGGCUGGacu -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 38625 | 0.69 | 0.217156 |
Target: 5'- gCCCGGCGcuucGCUGaaaUGCCCGAcgaaCCUGAa -3' miRNA: 3'- -GGGCCGC----UGGCcagACGGGCU----GGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 10878 | 0.69 | 0.206364 |
Target: 5'- aCCGGCGuCCGGgugGaCCCGugUUGGc -3' miRNA: 3'- gGGCCGCuGGCCagaC-GGGCugGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 11144 | 0.7 | 0.195534 |
Target: 5'- aUCGGgGGCUugucaugGGUCUGCCCGACUc-- -3' miRNA: 3'- gGGCCgCUGG-------CCAGACGGGCUGGacu -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 24500 | 0.7 | 0.186167 |
Target: 5'- gCCCGGCuucagauaGACCGuGUC-GCCCGGCUUc- -3' miRNA: 3'- -GGGCCG--------CUGGC-CAGaCGGGCUGGAcu -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 39164 | 0.72 | 0.139382 |
Target: 5'- -aUGGCGGCUuGaCUGCCCGGCUUGAa -3' miRNA: 3'- ggGCCGCUGGcCaGACGGGCUGGACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 18852 | 0.72 | 0.132127 |
Target: 5'- gCCGgggucgauaucGCGAaCGGUCUGCCCGACgugCUGAa -3' miRNA: 3'- gGGC-----------CGCUgGCCAGACGGGCUG---GACU- -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 11704 | 0.73 | 0.106465 |
Target: 5'- gUCCGGCG-CCGGUCccUGCCCuucGAUCUGc -3' miRNA: 3'- -GGGCCGCuGGCCAG--ACGGG---CUGGACu -5' |
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8185 | 3' | -62.1 | NC_001978.2 | + | 20578 | 1.1 | 0.000169 |
Target: 5'- aCCCGGCGACCGGUCUGCCCGACCUGAc -3' miRNA: 3'- -GGGCCGCUGGCCAGACGGGCUGGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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