miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8185 3' -62.1 NC_001978.2 + 1068 0.66 0.361108
Target:  5'- aCCCGGCGugCGGUaaaGCUCuucGCCccgGAg -3'
miRNA:   3'- -GGGCCGCugGCCAga-CGGGc--UGGa--CU- -5'
8185 3' -62.1 NC_001978.2 + 7105 0.66 0.360285
Target:  5'- gUCGGCuuccgGGCCGGUaugcagaCUGCCCG-CgCUGAc -3'
miRNA:   3'- gGGCCG-----CUGGCCA-------GACGGGCuG-GACU- -5'
8185 3' -62.1 NC_001978.2 + 11214 0.66 0.352937
Target:  5'- gCCCGaCGuuCGGUC-GUCUGAUCUGAc -3'
miRNA:   3'- -GGGCcGCugGCCAGaCGGGCUGGACU- -5'
8185 3' -62.1 NC_001978.2 + 6024 0.66 0.352127
Target:  5'- gCCCGG-GGCgcgaagguucugaCGGUCacucccgcUGCCUGAUCUGAc -3'
miRNA:   3'- -GGGCCgCUG-------------GCCAG--------ACGGGCUGGACU- -5'
8185 3' -62.1 NC_001978.2 + 5433 0.66 0.33699
Target:  5'- uCCCGGC----GGUC-GCCCGACCcgUGAu -3'
miRNA:   3'- -GGGCCGcuggCCAGaCGGGCUGG--ACU- -5'
8185 3' -62.1 NC_001978.2 + 9707 0.66 0.321575
Target:  5'- gUCCuucGCGACCGGUCcGCCCugggcaauGGCCUu- -3'
miRNA:   3'- -GGGc--CGCUGGCCAGaCGGG--------CUGGAcu -5'
8185 3' -62.1 NC_001978.2 + 22282 0.66 0.314067
Target:  5'- aCCCGacGCcgGACCGGUCcgggaaGCCUcACCUGAu -3'
miRNA:   3'- -GGGC--CG--CUGGCCAGa-----CGGGcUGGACU- -5'
8185 3' -62.1 NC_001978.2 + 19585 0.67 0.30017
Target:  5'- gUCGGCG-CCGGUCagcuccgugucgaacGUCCGGCCgUGAa -3'
miRNA:   3'- gGGCCGCuGGCCAGa--------------CGGGCUGG-ACU- -5'
8185 3' -62.1 NC_001978.2 + 22637 0.67 0.299452
Target:  5'- uUCCGuGCGACCGG-CUuaCCGAUCa-- -3'
miRNA:   3'- -GGGC-CGCUGGCCaGAcgGGCUGGacu -5'
8185 3' -62.1 NC_001978.2 + 16730 0.67 0.278524
Target:  5'- -gCGGCaagcgcGCCGGUuucCUGCCCaGCCUGGg -3'
miRNA:   3'- ggGCCGc-----UGGCCA---GACGGGcUGGACU- -5'
8185 3' -62.1 NC_001978.2 + 24429 0.68 0.258141
Target:  5'- gCCgGGCGACaCGGUCUaucugaaGCCgGGCgccaCUGAg -3'
miRNA:   3'- -GGgCCGCUG-GCCAGA-------CGGgCUG----GACU- -5'
8185 3' -62.1 NC_001978.2 + 20984 0.69 0.222732
Target:  5'- aCCCGGCGgucguACCGGgcaagCUccGUCCGGCCg-- -3'
miRNA:   3'- -GGGCCGC-----UGGCCa----GA--CGGGCUGGacu -5'
8185 3' -62.1 NC_001978.2 + 38625 0.69 0.217156
Target:  5'- gCCCGGCGcuucGCUGaaaUGCCCGAcgaaCCUGAa -3'
miRNA:   3'- -GGGCCGC----UGGCcagACGGGCU----GGACU- -5'
8185 3' -62.1 NC_001978.2 + 10878 0.69 0.206364
Target:  5'- aCCGGCGuCCGGgugGaCCCGugUUGGc -3'
miRNA:   3'- gGGCCGCuGGCCagaC-GGGCugGACU- -5'
8185 3' -62.1 NC_001978.2 + 11144 0.7 0.195534
Target:  5'- aUCGGgGGCUugucaugGGUCUGCCCGACUc-- -3'
miRNA:   3'- gGGCCgCUGG-------CCAGACGGGCUGGacu -5'
8185 3' -62.1 NC_001978.2 + 24500 0.7 0.186167
Target:  5'- gCCCGGCuucagauaGACCGuGUC-GCCCGGCUUc- -3'
miRNA:   3'- -GGGCCG--------CUGGC-CAGaCGGGCUGGAcu -5'
8185 3' -62.1 NC_001978.2 + 39164 0.72 0.139382
Target:  5'- -aUGGCGGCUuGaCUGCCCGGCUUGAa -3'
miRNA:   3'- ggGCCGCUGGcCaGACGGGCUGGACU- -5'
8185 3' -62.1 NC_001978.2 + 18852 0.72 0.132127
Target:  5'- gCCGgggucgauaucGCGAaCGGUCUGCCCGACgugCUGAa -3'
miRNA:   3'- gGGC-----------CGCUgGCCAGACGGGCUG---GACU- -5'
8185 3' -62.1 NC_001978.2 + 11704 0.73 0.106465
Target:  5'- gUCCGGCG-CCGGUCccUGCCCuucGAUCUGc -3'
miRNA:   3'- -GGGCCGCuGGCCAG--ACGGG---CUGGACu -5'
8185 3' -62.1 NC_001978.2 + 20578 1.1 0.000169
Target:  5'- aCCCGGCGACCGGUCUGCCCGACCUGAc -3'
miRNA:   3'- -GGGCCGCUGGCCAGACGGGCUGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.