miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8185 5' -53 NC_001978.2 + 36411 0.66 0.756962
Target:  5'- uGCGcGcUGACGAAGGGCGUcGUCGUc -3'
miRNA:   3'- gCGUuCuGCUGCUUCUUGCGaCGGCG- -5'
8185 5' -53 NC_001978.2 + 10686 0.66 0.756962
Target:  5'- aGCA--ACGACGA----CGCUGCCGa -3'
miRNA:   3'- gCGUucUGCUGCUucuuGCGACGGCg -5'
8185 5' -53 NC_001978.2 + 4515 0.66 0.746307
Target:  5'- cCGgAAGACGuGCGccccaguaGGGAACGCgUGUCGUg -3'
miRNA:   3'- -GCgUUCUGC-UGC--------UUCUUGCG-ACGGCG- -5'
8185 5' -53 NC_001978.2 + 25366 0.66 0.746307
Target:  5'- uCGCAuGugG-Cuu-GAGuCGCUGCCGCu -3'
miRNA:   3'- -GCGUuCugCuGcuuCUU-GCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 11829 0.67 0.73553
Target:  5'- uCGUAAucaAUGGCGAAGAACGC-GcCCGUc -3'
miRNA:   3'- -GCGUUc--UGCUGCUUCUUGCGaC-GGCG- -5'
8185 5' -53 NC_001978.2 + 9618 0.67 0.73553
Target:  5'- gCGcCGAGAUGACGAAGGccauugcccaGgGCggaccgGUCGCg -3'
miRNA:   3'- -GC-GUUCUGCUGCUUCU----------UgCGa-----CGGCG- -5'
8185 5' -53 NC_001978.2 + 27196 0.67 0.734446
Target:  5'- cCGCAacgcgugaguaccGGGCGACGuccGAuGCGCUcGCCGg -3'
miRNA:   3'- -GCGU-------------UCUGCUGCuu-CU-UGCGA-CGGCg -5'
8185 5' -53 NC_001978.2 + 27026 0.67 0.724643
Target:  5'- uCGCAAGcAUGAUcAGGAACGUcGgCGCg -3'
miRNA:   3'- -GCGUUC-UGCUGcUUCUUGCGaCgGCG- -5'
8185 5' -53 NC_001978.2 + 2161 0.67 0.724643
Target:  5'- gCGCGGuGCGuCGAc-AugGUUGCCGCa -3'
miRNA:   3'- -GCGUUcUGCuGCUucUugCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 144 0.67 0.718063
Target:  5'- aGUGAGuCGAgCGAagagcccggagcuucGGAccgggaacgccaACGCUGCCGCu -3'
miRNA:   3'- gCGUUCuGCU-GCU---------------UCU------------UGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 31000 0.67 0.713658
Target:  5'- gCGUAAGGCGuucgcuaaGCGcuauguCGCUGCCGUg -3'
miRNA:   3'- -GCGUUCUGC--------UGCuucuu-GCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 4480 0.67 0.713658
Target:  5'- uGCGAGuCGGCGAAGAcCGUgaagGCgGa -3'
miRNA:   3'- gCGUUCuGCUGCUUCUuGCGa---CGgCg -5'
8185 5' -53 NC_001978.2 + 4106 0.67 0.713658
Target:  5'- gGCgAAGuCGGCGAAGAGcCGgaGCCu- -3'
miRNA:   3'- gCG-UUCuGCUGCUUCUU-GCgaCGGcg -5'
8185 5' -53 NC_001978.2 + 30295 0.67 0.691445
Target:  5'- cCGCcgAGGGCGACGugu-ACGaaGCCGCc -3'
miRNA:   3'- -GCG--UUCUGCUGCuucuUGCgaCGGCG- -5'
8185 5' -53 NC_001978.2 + 13397 0.67 0.691445
Target:  5'- uCGCGgcuGACGACGucGGGGCG-UGUCGUg -3'
miRNA:   3'- -GCGUu--CUGCUGCu-UCUUGCgACGGCG- -5'
8185 5' -53 NC_001978.2 + 2784 0.67 0.691445
Target:  5'- gGgAAGACGACGAAGGcaACGUcuUCGUg -3'
miRNA:   3'- gCgUUCUGCUGCUUCU--UGCGacGGCG- -5'
8185 5' -53 NC_001978.2 + 30041 0.67 0.691445
Target:  5'- cCGUAAGGCGGCucAGcgcAugGCU-CCGCa -3'
miRNA:   3'- -GCGUUCUGCUGcuUC---UugCGAcGGCG- -5'
8185 5' -53 NC_001978.2 + 20978 0.67 0.691445
Target:  5'- aCGCugacGGACGGCGAcaAGGACGCcaacCCGa -3'
miRNA:   3'- -GCGu---UCUGCUGCU--UCUUGCGac--GGCg -5'
8185 5' -53 NC_001978.2 + 3573 0.68 0.684729
Target:  5'- gGCAcGAUGAgCGAAGAggguuuggcccgugcGCGCgaagcguggcgUGCCGCu -3'
miRNA:   3'- gCGUuCUGCU-GCUUCU---------------UGCG-----------ACGGCG- -5'
8185 5' -53 NC_001978.2 + 22413 0.68 0.680242
Target:  5'- gGCAAccgggaaccGAUGcCGGAGuucgacGGCGCUGCCGUu -3'
miRNA:   3'- gCGUU---------CUGCuGCUUC------UUGCGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.