miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8186 5' -56.9 NC_001978.2 + 17310 0.67 0.484243
Target:  5'- gGGCGUUggUCgGCGUauccgGCgGUCGGCGCu -3'
miRNA:   3'- -UCGUAGuaAG-CGCGa----CGgCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 13647 0.67 0.473957
Target:  5'- cGGCAauggCGacUCGCGCcuaUGCgGUCGGCGCc -3'
miRNA:   3'- -UCGUa---GUa-AGCGCG---ACGgCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 12850 0.67 0.473957
Target:  5'- uGGCGUCGgccguaUCGCGCuuaUGUCGUCGG-GCu -3'
miRNA:   3'- -UCGUAGUa-----AGCGCG---ACGGCGGCUgCG- -5'
8186 5' -56.9 NC_001978.2 + 29177 0.67 0.463781
Target:  5'- aAGCccCGUgccgCGCGCUucacGCUGCCaACGCg -3'
miRNA:   3'- -UCGuaGUAa---GCGCGA----CGGCGGcUGCG- -5'
8186 5' -56.9 NC_001978.2 + 12756 0.67 0.463781
Target:  5'- uGGUGUaCGUggCGaCGCUGCCGaCCGGCa- -3'
miRNA:   3'- -UCGUA-GUAa-GC-GCGACGGC-GGCUGcg -5'
8186 5' -56.9 NC_001978.2 + 34352 0.67 0.46176
Target:  5'- gGGCAggGUUCGCGCgucguguacagcgUGgcuccggcaagcuCCGCCGACGg -3'
miRNA:   3'- -UCGUagUAAGCGCG-------------AC-------------GGCGGCUGCg -5'
8186 5' -56.9 NC_001978.2 + 2184 0.67 0.453721
Target:  5'- cGCAUgGUcuuugggauUCGC-UUGCUGCCGACGa -3'
miRNA:   3'- uCGUAgUA---------AGCGcGACGGCGGCUGCg -5'
8186 5' -56.9 NC_001978.2 + 39704 0.68 0.44378
Target:  5'- ----aCGUUgGCGCUucugugggaaGCCGcCCGACGCu -3'
miRNA:   3'- ucguaGUAAgCGCGA----------CGGC-GGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 531 0.68 0.442793
Target:  5'- gGGCAUCGUUgcCGCugaagcccggaagGUUGCCGCCGGu-- -3'
miRNA:   3'- -UCGUAGUAA--GCG-------------CGACGGCGGCUgcg -5'
8186 5' -56.9 NC_001978.2 + 38578 0.68 0.414715
Target:  5'- cGCGcUCGacUUCGCGCUgaaggucgGCCGCCuugucuucguuGGCGCu -3'
miRNA:   3'- uCGU-AGU--AAGCGCGA--------CGGCGG-----------CUGCG- -5'
8186 5' -56.9 NC_001978.2 + 6793 0.68 0.414715
Target:  5'- aGGCcgC--UUGCGCUGCCGUgaACGCc -3'
miRNA:   3'- -UCGuaGuaAGCGCGACGGCGgcUGCG- -5'
8186 5' -56.9 NC_001978.2 + 3010 0.68 0.413766
Target:  5'- uGgGUCGUacgguucccaggcUCGCGCcucaaUGCCGUCGAgCGCu -3'
miRNA:   3'- uCgUAGUA-------------AGCGCG-----ACGGCGGCU-GCG- -5'
8186 5' -56.9 NC_001978.2 + 31690 0.68 0.395999
Target:  5'- uGCGUCGUUUgaGCGgUGCggauucgauuCGCgCGACGCg -3'
miRNA:   3'- uCGUAGUAAG--CGCgACG----------GCG-GCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 24112 0.69 0.386848
Target:  5'- cGCAaCGggUCGCGUaauugaucagGUCGCCGACGUa -3'
miRNA:   3'- uCGUaGUa-AGCGCGa---------CGGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 4764 0.69 0.377837
Target:  5'- cGUAUCggugaGUUCGCGCcGCCGaCUGAagaGCg -3'
miRNA:   3'- uCGUAG-----UAAGCGCGaCGGC-GGCUg--CG- -5'
8186 5' -56.9 NC_001978.2 + 13578 0.69 0.376944
Target:  5'- cGGCGUCgacuccGUUCGCGCUGaCGCauggugugaacugUGACGUg -3'
miRNA:   3'- -UCGUAG------UAAGCGCGACgGCG-------------GCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 33374 0.69 0.372499
Target:  5'- cGGguUCgGUUCGCGCUGCCcacaaucgagcuuguGaCCGGuCGCg -3'
miRNA:   3'- -UCguAG-UAAGCGCGACGG---------------C-GGCU-GCG- -5'
8186 5' -56.9 NC_001978.2 + 8410 0.69 0.368969
Target:  5'- cGGCAauacgcCGUUCGUaaGUUGCCGCCacGACGUc -3'
miRNA:   3'- -UCGUa-----GUAAGCG--CGACGGCGG--CUGCG- -5'
8186 5' -56.9 NC_001978.2 + 9898 0.69 0.360244
Target:  5'- uGCAUCGuUUCGC-CUGCCgacuucGCCG-CGCc -3'
miRNA:   3'- uCGUAGU-AAGCGcGACGG------CGGCuGCG- -5'
8186 5' -56.9 NC_001978.2 + 20392 0.69 0.360244
Target:  5'- aGGCcgaaGUCGagUCGCGCcgGUCgGCCGACGUc -3'
miRNA:   3'- -UCG----UAGUa-AGCGCGa-CGG-CGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.