miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8187 3' -61.8 NC_001978.2 + 6901 0.66 0.346554
Target:  5'- -aCUCCGgCCguacguCCAugAGCCCCGggaccgacacaaggUCGGc -3'
miRNA:   3'- caGAGGCgGG------GGUugUCGGGGC--------------AGCC- -5'
8187 3' -61.8 NC_001978.2 + 23223 0.66 0.325254
Target:  5'- cGUCUCgcuguaGCCggaguggaaacgCCCAACGGUgUCGUCGGc -3'
miRNA:   3'- -CAGAGg-----CGG------------GGGUUGUCGgGGCAGCC- -5'
8187 3' -61.8 NC_001978.2 + 35759 0.66 0.317615
Target:  5'- uGUCgUCCGUCUCC---GGCUCCGUaCGGg -3'
miRNA:   3'- -CAG-AGGCGGGGGuugUCGGGGCA-GCC- -5'
8187 3' -61.8 NC_001978.2 + 4678 0.66 0.310113
Target:  5'- cGUCgUCCGCCCgUcGCuGCCCacCGUCGa -3'
miRNA:   3'- -CAG-AGGCGGGgGuUGuCGGG--GCAGCc -5'
8187 3' -61.8 NC_001978.2 + 20329 0.67 0.302746
Target:  5'- gGUCgugaugaUGCCCUCAGCGGCUUCGgCGGc -3'
miRNA:   3'- -CAGag-----GCGGGGGUUGUCGGGGCaGCC- -5'
8187 3' -61.8 NC_001978.2 + 36783 0.67 0.281457
Target:  5'- cGUCUCCGgCUCCGugAcgggcucagGCUCCGcCGGu -3'
miRNA:   3'- -CAGAGGCgGGGGUugU---------CGGGGCaGCC- -5'
8187 3' -61.8 NC_001978.2 + 30045 0.67 0.274629
Target:  5'- -aCUUCGCgCUCAGCGGCaagCCgGUCGGc -3'
miRNA:   3'- caGAGGCGgGGGUUGUCG---GGgCAGCC- -5'
8187 3' -61.8 NC_001978.2 + 36346 0.68 0.242471
Target:  5'- ----aCGCCCCCcgguCAGCaCCCGcCGGg -3'
miRNA:   3'- cagagGCGGGGGuu--GUCG-GGGCaGCC- -5'
8187 3' -61.8 NC_001978.2 + 12226 0.69 0.21351
Target:  5'- -aCgugCCGCCCCCAGCcguGCCCCcgauaaGGa -3'
miRNA:   3'- caGa--GGCGGGGGUUGu--CGGGGcag---CC- -5'
8187 3' -61.8 NC_001978.2 + 15343 0.7 0.177996
Target:  5'- cGUCUucCCGCuaccgacucCCCCGACAugaaCCCGUCGGa -3'
miRNA:   3'- -CAGA--GGCG---------GGGGUUGUcg--GGGCAGCC- -5'
8187 3' -61.8 NC_001978.2 + 21554 1.1 0.000146
Target:  5'- cGUCUCCGCCCCCAACAGCCCCGUCGGg -3'
miRNA:   3'- -CAGAGGCGGGGGUUGUCGGGGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.