miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8187 5' -57.8 NC_001978.2 + 24085 0.66 0.504079
Target:  5'- cGCCGACGuacaGGGCUUCacccgcguaGUCAgUGaCCGUUc -3'
miRNA:   3'- aUGGCUGC----CCCGAAG---------CAGU-AC-GGCAG- -5'
8187 5' -57.8 NC_001978.2 + 16309 0.66 0.504079
Target:  5'- gACCGuCGGacccGGCUUCGUguUGaccgaCGUCa -3'
miRNA:   3'- aUGGCuGCC----CCGAAGCAguACg----GCAG- -5'
8187 5' -57.8 NC_001978.2 + 12480 0.66 0.493633
Target:  5'- gUAUCGACuGGGCggcaGUgcUGCCGUCu -3'
miRNA:   3'- -AUGGCUGcCCCGaag-CAguACGGCAG- -5'
8187 5' -57.8 NC_001978.2 + 35913 0.66 0.492594
Target:  5'- aUGCCGACGucGGGCaagggaaggUcggcgcccaggUCGUCAagaaccuUGCCGUCg -3'
miRNA:   3'- -AUGGCUGC--CCCG---------A-----------AGCAGU-------ACGGCAG- -5'
8187 5' -57.8 NC_001978.2 + 11269 0.66 0.473047
Target:  5'- gACCGaACGucGGGCaUCGUaagCAaGCCGUCg -3'
miRNA:   3'- aUGGC-UGC--CCCGaAGCA---GUaCGGCAG- -5'
8187 5' -57.8 NC_001978.2 + 1583 0.66 0.456893
Target:  5'- aGCCGAcCGGGGCgaCGcUCAgcgacagaucaucgcUGCCGcCa -3'
miRNA:   3'- aUGGCU-GCCCCGaaGC-AGU---------------ACGGCaG- -5'
8187 5' -57.8 NC_001978.2 + 23001 0.67 0.443006
Target:  5'- cACUGAgGGGGCUcaggugugggauUgGUCcgGCCGg- -3'
miRNA:   3'- aUGGCUgCCCCGA------------AgCAGuaCGGCag -5'
8187 5' -57.8 NC_001978.2 + 16609 0.67 0.423587
Target:  5'- cUACCGGCaGGGGCgcgguaGUUGUGaaGUCg -3'
miRNA:   3'- -AUGGCUG-CCCCGaag---CAGUACggCAG- -5'
8187 5' -57.8 NC_001978.2 + 21973 0.67 0.403756
Target:  5'- uUGCC-ACGGGGCaaggaaguuuugcUUCGgcagCAUGCCGa- -3'
miRNA:   3'- -AUGGcUGCCCCG-------------AAGCa---GUACGGCag -5'
8187 5' -57.8 NC_001978.2 + 29825 0.67 0.401898
Target:  5'- cUGCCGACGGGGggUgaucaguuccggucCGUCGUGCUc-- -3'
miRNA:   3'- -AUGGCUGCCCCgaA--------------GCAGUACGGcag -5'
8187 5' -57.8 NC_001978.2 + 36407 0.68 0.368526
Target:  5'- cGCUGACGaaGGGCgucgUCGUCAUgagGCUGUa -3'
miRNA:   3'- aUGGCUGC--CCCGa---AGCAGUA---CGGCAg -5'
8187 5' -57.8 NC_001978.2 + 15865 0.69 0.342898
Target:  5'- gGCCGACGGGGUgccCGUguUGUuCGUg -3'
miRNA:   3'- aUGGCUGCCCCGaa-GCAguACG-GCAg -5'
8187 5' -57.8 NC_001978.2 + 934 0.69 0.325736
Target:  5'- aACCGGCuugucgacuccGGcGGCUUCGUCGcgcuucaUGCgGUCg -3'
miRNA:   3'- aUGGCUG-----------CC-CCGAAGCAGU-------ACGgCAG- -5'
8187 5' -57.8 NC_001978.2 + 29122 0.69 0.318579
Target:  5'- cGCgGcACGGGGCUU-GUCAcugUGuCCGUCa -3'
miRNA:   3'- aUGgC-UGCCCCGAAgCAGU---AC-GGCAG- -5'
8187 5' -57.8 NC_001978.2 + 1965 0.7 0.280976
Target:  5'- -uCCGuCGGGGUcggGUCcgGCCGUCg -3'
miRNA:   3'- auGGCuGCCCCGaagCAGuaCGGCAG- -5'
8187 5' -57.8 NC_001978.2 + 29569 0.7 0.264898
Target:  5'- uUACCGAugaaccuucgguaaCGGGGCUUCuGUCAuaUGCCa-- -3'
miRNA:   3'- -AUGGCU--------------GCCCCGAAG-CAGU--ACGGcag -5'
8187 5' -57.8 NC_001978.2 + 35742 0.73 0.174387
Target:  5'- -uCCGuACGGGGCUUCGa-GUGCCGa- -3'
miRNA:   3'- auGGC-UGCCCCGAAGCagUACGGCag -5'
8187 5' -57.8 NC_001978.2 + 36539 0.74 0.156202
Target:  5'- aACgCGACGGGccacgcgcccaGCUUCGUCAcGCCGUa -3'
miRNA:   3'- aUG-GCUGCCC-----------CGAAGCAGUaCGGCAg -5'
8187 5' -57.8 NC_001978.2 + 38308 0.8 0.054098
Target:  5'- uUGCCGcCGGGGCUUCGgUGUGuCCGUCa -3'
miRNA:   3'- -AUGGCuGCCCCGAAGCaGUAC-GGCAG- -5'
8187 5' -57.8 NC_001978.2 + 21589 1.08 0.000419
Target:  5'- gUACCGACGGGGCUUCGUCAUGCCGUCa -3'
miRNA:   3'- -AUGGCUGCCCCGAAGCAGUACGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.