miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8188 5' -54.2 NC_001978.2 + 18817 0.66 0.708122
Target:  5'- ---gGGUGcgCgCGGCguuccccgcuaUCGACGCUGCg -3'
miRNA:   3'- guaaCCAUuaGgGCCG-----------AGCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 19928 0.66 0.69699
Target:  5'- ---cGGcc--CCCGGCaCGGCGCCAa -3'
miRNA:   3'- guaaCCauuaGGGCCGaGCUGCGGUg -5'
8188 5' -54.2 NC_001978.2 + 3001 0.66 0.69699
Target:  5'- ---cGGU--UCCCaGGCUCG-CGCCuCa -3'
miRNA:   3'- guaaCCAuuAGGG-CCGAGCuGCGGuG- -5'
8188 5' -54.2 NC_001978.2 + 36929 0.66 0.685791
Target:  5'- ---cGGaagAAguucgCCCaGCUCGACGCCGa -3'
miRNA:   3'- guaaCCa--UUa----GGGcCGAGCUGCGGUg -5'
8188 5' -54.2 NC_001978.2 + 3612 0.66 0.685791
Target:  5'- ---cGGUaccucaaccacaGcgCCCGGCaUGGCGCCAUu -3'
miRNA:   3'- guaaCCA------------UuaGGGCCGaGCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 36553 0.66 0.685791
Target:  5'- ---cGGUGAUCCauCGGaacgCGACggGCCACg -3'
miRNA:   3'- guaaCCAUUAGG--GCCga--GCUG--CGGUG- -5'
8188 5' -54.2 NC_001978.2 + 22248 0.66 0.674538
Target:  5'- --gUGGUcAUgCgcguaUGGCUCGACGCCGa -3'
miRNA:   3'- guaACCAuUAgG-----GCCGAGCUGCGGUg -5'
8188 5' -54.2 NC_001978.2 + 13554 0.66 0.663241
Target:  5'- ---gGGUgcugaaguacAcgCCCGGUUCGGCGUCGa -3'
miRNA:   3'- guaaCCA----------UuaGGGCCGAGCUGCGGUg -5'
8188 5' -54.2 NC_001978.2 + 16319 0.67 0.633755
Target:  5'- ---cGGUAAgcgugaccgucggaCCCGGCUucguguugacCGACGUCACg -3'
miRNA:   3'- guaaCCAUUa-------------GGGCCGA----------GCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 27349 0.67 0.626942
Target:  5'- ---aGGUuuGGUCCCGGaaggcguuuuaCGGCGCCAUg -3'
miRNA:   3'- guaaCCA--UUAGGGCCga---------GCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 23895 0.67 0.606522
Target:  5'- --aUGGUGugugCCCaGGCUuccggCGACGCCGg -3'
miRNA:   3'- guaACCAUua--GGG-CCGA-----GCUGCGGUg -5'
8188 5' -54.2 NC_001978.2 + 25424 0.67 0.595207
Target:  5'- ---cGGU---UCgGGCUCGACGUCGCc -3'
miRNA:   3'- guaaCCAuuaGGgCCGAGCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 35150 0.67 0.595207
Target:  5'- aGUUGGUug-CCCGGCUucUGAguuCGCCGu -3'
miRNA:   3'- gUAACCAuuaGGGCCGA--GCU---GCGGUg -5'
8188 5' -54.2 NC_001978.2 + 23592 0.68 0.583925
Target:  5'- ---cGGUGAUugCCgGGUUCGGCGCguCg -3'
miRNA:   3'- guaaCCAUUA--GGgCCGAGCUGCGguG- -5'
8188 5' -54.2 NC_001978.2 + 20567 0.68 0.572686
Target:  5'- gCGUUGGUGAgcuucagcCCCaGgUCGACGCCc- -3'
miRNA:   3'- -GUAACCAUUa-------GGGcCgAGCUGCGGug -5'
8188 5' -54.2 NC_001978.2 + 27236 0.7 0.454171
Target:  5'- ---cGGUuucuUCCCGggcguGCUCGACGCUGCc -3'
miRNA:   3'- guaaCCAuu--AGGGC-----CGAGCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 1592 0.72 0.333241
Target:  5'- --aUGGUGcucuUCCCGuuCUUGGCGCCACg -3'
miRNA:   3'- guaACCAUu---AGGGCc-GAGCUGCGGUG- -5'
8188 5' -54.2 NC_001978.2 + 21695 1.09 0.000819
Target:  5'- cCAUUGGUAAUCCCGGCUCGACGCCACu -3'
miRNA:   3'- -GUAACCAUUAGGGCCGAGCUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.