miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8189	3'	-55.9	NC_001978.2	+	16407	0.66	0.604532
	Target:  5'- cAAGcgCUGgGCUucgaagcguggucgGUCUACCcGGGCGGc -3' miRNA:   3'- -UUCuaGGCgUGA--------------UAGAUGGcCCCGCC- -5'
8189	3'	-55.9	NC_001978.2	+	2893	0.66	0.574468
	Target:  5'- -uGGUCUGCACUcuUCggGCgGGGGCa- -3' miRNA:   3'- uuCUAGGCGUGAu-AGa-UGgCCCCGcc -5'
8189	3'	-55.9	NC_001978.2	+	33945	0.66	0.574468
	Target:  5'- aGAGAUCacgGCGCU-UCUgaACCGGGGUc- -3' miRNA:   3'- -UUCUAGg--CGUGAuAGA--UGGCCCCGcc -5'
8189	3'	-55.9	NC_001978.2	+	24825	0.67	0.519854
	Target:  5'- aGAGAUCaugcgGCGCUGgggCUACCGGuGCGc -3' miRNA:   3'- -UUCUAGg----CGUGAUa--GAUGGCCcCGCc -5'
8189	3'	-55.9	NC_001978.2	+	32142	0.68	0.484942
	Target:  5'- ----gCCGCAUgg-CUgaacgaggaagccgACCGGGGCGGa -3' miRNA:   3'- uucuaGGCGUGauaGA--------------UGGCCCCGCC- -5'
8189	3'	-55.9	NC_001978.2	+	1154	0.68	0.447185
	Target:  5'- --cGUCCGCGUUGUgCU-CCGGGGCGa -3' miRNA:   3'- uucUAGGCGUGAUA-GAuGGCCCCGCc -5'
8189	3'	-55.9	NC_001978.2	+	28974	0.75	0.18455
	Target:  5'- cGGAUUCgGCAagGUCUACgGGGGCGGa -3' miRNA:   3'- uUCUAGG-CGUgaUAGAUGgCCCCGCC- -5'
8189	3'	-55.9	NC_001978.2	+	21804	1.07	0.000772
	Target:  5'- gAAGAUCCGCACUAUCUACCGGGGCGGc -3' miRNA:   3'- -UUCUAGGCGUGAUAGAUGGCCCCGCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home