miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8190 5' -54.7 NC_001978.2 + 38087 0.66 0.688003
Target:  5'- cGGCGUAUgaCUGGC-UCGCCCacugccUUCAGAc -3'
miRNA:   3'- -CUGCAUAg-GGCUGcAGCGGG------AAGUCU- -5'
8190 5' -54.7 NC_001978.2 + 26736 0.66 0.681354
Target:  5'- gGACGUGUUCgGGCGcaucacgaagacgaCGCCCUUCGc- -3'
miRNA:   3'- -CUGCAUAGGgCUGCa-------------GCGGGAAGUcu -5'
8190 5' -54.7 NC_001978.2 + 16103 0.66 0.654607
Target:  5'- -cCGUA-CCCGG-GUCaCCCUUCGGAc -3'
miRNA:   3'- cuGCAUaGGGCUgCAGcGGGAAGUCU- -5'
8190 5' -54.7 NC_001978.2 + 30482 0.66 0.653489
Target:  5'- cGACGaagagCCCGACGgcgagauUCGCCCgaaggUCGGu -3'
miRNA:   3'- -CUGCaua--GGGCUGC-------AGCGGGa----AGUCu -5'
8190 5' -54.7 NC_001978.2 + 15986 0.67 0.598655
Target:  5'- -cCGUGUCgCCcuUGUCGCCCUUCGc- -3'
miRNA:   3'- cuGCAUAG-GGcuGCAGCGGGAAGUcu -5'
8190 5' -54.7 NC_001978.2 + 25564 0.68 0.587514
Target:  5'- cGGCGUGaCCCGugG-CGCCCa--GGGg -3'
miRNA:   3'- -CUGCAUaGGGCugCaGCGGGaagUCU- -5'
8190 5' -54.7 NC_001978.2 + 25309 0.68 0.554358
Target:  5'- cGACGgagCUgaCGACGUCGCCCgugUCAc- -3'
miRNA:   3'- -CUGCauaGG--GCUGCAGCGGGa--AGUcu -5'
8190 5' -54.7 NC_001978.2 + 21166 0.68 0.53256
Target:  5'- -cCGUcuUCUCGGCGUCGCUCUUCu-- -3'
miRNA:   3'- cuGCAu-AGGGCUGCAGCGGGAAGucu -5'
8190 5' -54.7 NC_001978.2 + 6621 0.69 0.521776
Target:  5'- aACGUcaCCCGgcACGUUGgCCUUCAGGg -3'
miRNA:   3'- cUGCAuaGGGC--UGCAGCgGGAAGUCU- -5'
8190 5' -54.7 NC_001978.2 + 13045 0.72 0.322384
Target:  5'- uGACGuUAUCgCGACGUUGCCCgucaCGGGc -3'
miRNA:   3'- -CUGC-AUAGgGCUGCAGCGGGaa--GUCU- -5'
8190 5' -54.7 NC_001978.2 + 29687 0.83 0.060692
Target:  5'- aGGCGUAaCCCGACGUCaUCCUUCAGAu -3'
miRNA:   3'- -CUGCAUaGGGCUGCAGcGGGAAGUCU- -5'
8190 5' -54.7 NC_001978.2 + 22345 1.09 0.000881
Target:  5'- cGACGUAUCCCGACGUCGCCCUUCAGAu -3'
miRNA:   3'- -CUGCAUAGGGCUGCAGCGGGAAGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.