miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8191 3' -52.3 NC_001978.2 + 23001 0.66 0.810693
Target:  5'- cACUGAgGGGGCucagguGUGGGauuggUCcGGCCg -3'
miRNA:   3'- -UGACUgCUCUG------CACCCgaa--AGuUCGG- -5'
8191 3' -52.3 NC_001978.2 + 36289 0.66 0.804762
Target:  5'- uGCUGACcggGGGGCGUugguuccugauccugGGGCUugugUUCuacAGCCu -3'
miRNA:   3'- -UGACUG---CUCUGCA---------------CCCGA----AAGu--UCGG- -5'
8191 3' -52.3 NC_001978.2 + 17695 0.66 0.800769
Target:  5'- --cGACGgcuccGGACGgcucagcGGGCUUgucaggcguggUCGAGCCg -3'
miRNA:   3'- ugaCUGC-----UCUGCa------CCCGAA-----------AGUUCGG- -5'
8191 3' -52.3 NC_001978.2 + 31092 0.66 0.790653
Target:  5'- gACUGACGA-ACGccGGGCg--CAAGUa -3'
miRNA:   3'- -UGACUGCUcUGCa-CCCGaaaGUUCGg -5'
8191 3' -52.3 NC_001978.2 + 25806 0.67 0.759278
Target:  5'- aGCUGGcCGA-AgGUcugaaGGGCUUUCAGGUCa -3'
miRNA:   3'- -UGACU-GCUcUgCA-----CCCGAAAGUUCGG- -5'
8191 3' -52.3 NC_001978.2 + 21627 0.67 0.731045
Target:  5'- uGCUGACccgacggggcuguugGGGGCGgagacGGGCgcUCAGGCg -3'
miRNA:   3'- -UGACUG---------------CUCUGCa----CCCGaaAGUUCGg -5'
8191 3' -52.3 NC_001978.2 + 11862 0.67 0.726632
Target:  5'- cGCUGACGGcucGACGUGGcCUgaguauGGCCc -3'
miRNA:   3'- -UGACUGCU---CUGCACCcGAaagu--UCGG- -5'
8191 3' -52.3 NC_001978.2 + 3776 0.67 0.726632
Target:  5'- aACUGACGGGucugaaggaAC-UGGGCUUcgucggggcUCAuAGCCa -3'
miRNA:   3'- -UGACUGCUC---------UGcACCCGAA---------AGU-UCGG- -5'
8191 3' -52.3 NC_001978.2 + 34764 0.68 0.704334
Target:  5'- cUUGA--AGAUGUGGGCUuucUUCGGGUCc -3'
miRNA:   3'- uGACUgcUCUGCACCCGA---AAGUUCGG- -5'
8191 3' -52.3 NC_001978.2 + 38151 0.68 0.65892
Target:  5'- cGCUGACGucccgaAGGCGUGGcGCggcUUCcccguGCCg -3'
miRNA:   3'- -UGACUGC------UCUGCACC-CGa--AAGuu---CGG- -5'
8191 3' -52.3 NC_001978.2 + 10202 0.69 0.647469
Target:  5'- --gGugGAuaGCGUcGGGCgUUCAGGCCg -3'
miRNA:   3'- ugaCugCUc-UGCA-CCCGaAAGUUCGG- -5'
8191 3' -52.3 NC_001978.2 + 15293 0.69 0.624532
Target:  5'- cGCUcGAUGAGACG-GGGCagaUCAuugacGCCa -3'
miRNA:   3'- -UGA-CUGCUCUGCaCCCGaa-AGUu----CGG- -5'
8191 3' -52.3 NC_001978.2 + 8903 0.69 0.601623
Target:  5'- -aUGACG-GGCGUGcGGCgcUCAGuGCCc -3'
miRNA:   3'- ugACUGCuCUGCAC-CCGaaAGUU-CGG- -5'
8191 3' -52.3 NC_001978.2 + 12169 0.71 0.479582
Target:  5'- gGCUGgggGCGGcACGUGGGCauggUCGAGCg -3'
miRNA:   3'- -UGAC---UGCUcUGCACCCGaa--AGUUCGg -5'
8191 3' -52.3 NC_001978.2 + 22463 1.13 0.000729
Target:  5'- gACUGACGAGACGUGGGCUUUCAAGCCg -3'
miRNA:   3'- -UGACUGCUCUGCACCCGAAAGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.