miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8191 5' -58.3 NC_001978.2 + 15661 0.66 0.493517
Target:  5'- -gGGCUCGacGGCGacaCguaCGCCCAGUUCa -3'
miRNA:   3'- gaCCGGGC--CUGCa--Gaa-GCGGGUCAAG- -5'
8191 5' -58.3 NC_001978.2 + 2688 0.66 0.493517
Target:  5'- -cGcCCCGGGCGUCUUCcUUCAGUa- -3'
miRNA:   3'- gaCcGGGCCUGCAGAAGcGGGUCAag -5'
8191 5' -58.3 NC_001978.2 + 4239 0.66 0.483251
Target:  5'- -cGGCuCCGG-C-UCUUCGUCCGGcUCu -3'
miRNA:   3'- gaCCG-GGCCuGcAGAAGCGGGUCaAG- -5'
8191 5' -58.3 NC_001978.2 + 11366 0.66 0.48223
Target:  5'- -cGGCuuucaugCCGGGCGUUgaugaaUCGCCCuuccGGUUCc -3'
miRNA:   3'- gaCCG-------GGCCUGCAGa-----AGCGGG----UCAAG- -5'
8191 5' -58.3 NC_001978.2 + 20909 0.66 0.463036
Target:  5'- -cGG-CCGGACGgagCUU-GCCCGGUa- -3'
miRNA:   3'- gaCCgGGCCUGCa--GAAgCGGGUCAag -5'
8191 5' -58.3 NC_001978.2 + 33181 0.66 0.463036
Target:  5'- gCUuGCCCaGGACGUCacgccaCGCCCgaaGGUUCc -3'
miRNA:   3'- -GAcCGGG-CCUGCAGaa----GCGGG---UCAAG- -5'
8191 5' -58.3 NC_001978.2 + 24477 0.67 0.433572
Target:  5'- --cGCCCGGcuucaGCGcUCgcacgUCGCCCAGggCa -3'
miRNA:   3'- gacCGGGCC-----UGC-AGa----AGCGGGUCaaG- -5'
8191 5' -58.3 NC_001978.2 + 21339 0.67 0.423995
Target:  5'- -cGcGCCCGGGgG-CUUCGCCCGu--- -3'
miRNA:   3'- gaC-CGGGCCUgCaGAAGCGGGUcaag -5'
8191 5' -58.3 NC_001978.2 + 25424 0.68 0.369303
Target:  5'- -cGGUUCGGGC-UCgacgUCGCCCAGg-- -3'
miRNA:   3'- gaCCGGGCCUGcAGa---AGCGGGUCaag -5'
8191 5' -58.3 NC_001978.2 + 4173 0.68 0.352177
Target:  5'- -aGGCuCCGGcucuucgcCGaCUUCGCCCAgGUUCa -3'
miRNA:   3'- gaCCG-GGCCu-------GCaGAAGCGGGU-CAAG- -5'
8191 5' -58.3 NC_001978.2 + 25494 0.87 0.016469
Target:  5'- aCUGGCCCGacuucgugucGACGUCgUUCGCCCGGUUCc -3'
miRNA:   3'- -GACCGGGC----------CUGCAG-AAGCGGGUCAAG- -5'
8191 5' -58.3 NC_001978.2 + 22497 1.09 0.00037
Target:  5'- aCUGGCCCGGACGUCUUCGCCCAGUUCc -3'
miRNA:   3'- -GACCGGGCCUGCAGAAGCGGGUCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.