miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8194 5' -53.3 NC_001978.2 + 25075 0.66 0.757336
Target:  5'- cAACCCGGCucAGUCGgCGggcuucgGACCgaaggUCAg -3'
miRNA:   3'- cUUGGGCCG--UUAGUgGCa------CUGGa----AGU- -5'
8194 5' -53.3 NC_001978.2 + 3384 0.66 0.746593
Target:  5'- --uUCCGGCGAagACCGUcGACCa--- -3'
miRNA:   3'- cuuGGGCCGUUagUGGCA-CUGGaagu -5'
8194 5' -53.3 NC_001978.2 + 35207 0.66 0.735725
Target:  5'- aAGCCgGGCAAccaacUUGCCGUGuGCCUUgAa -3'
miRNA:   3'- cUUGGgCCGUU-----AGUGGCAC-UGGAAgU- -5'
8194 5' -53.3 NC_001978.2 + 5613 0.66 0.724745
Target:  5'- cGACCCauGGC-GUCACCGaUGGCCg--- -3'
miRNA:   3'- cUUGGG--CCGuUAGUGGC-ACUGGaagu -5'
8194 5' -53.3 NC_001978.2 + 40495 0.67 0.679956
Target:  5'- -cACCCgGGCGcccuUCGCUGUGACCccgaaUCAg -3'
miRNA:   3'- cuUGGG-CCGUu---AGUGGCACUGGa----AGU- -5'
8194 5' -53.3 NC_001978.2 + 27109 0.67 0.657217
Target:  5'- cGGAgUCGGCGggCAUUGUGGCCUgggCGg -3'
miRNA:   3'- -CUUgGGCCGUuaGUGGCACUGGAa--GU- -5'
8194 5' -53.3 NC_001978.2 + 39222 0.67 0.645804
Target:  5'- gGGACCCGGCA---ACCGUuaugcGAauCCUUCGg -3'
miRNA:   3'- -CUUGGGCCGUuagUGGCA-----CU--GGAAGU- -5'
8194 5' -53.3 NC_001978.2 + 15283 0.68 0.634378
Target:  5'- aGGCCCGGacccgugaaGGUaACCGUGcCCUUCAg -3'
miRNA:   3'- cUUGGGCCg--------UUAgUGGCACuGGAAGU- -5'
8194 5' -53.3 NC_001978.2 + 5433 0.68 0.622949
Target:  5'- --uCCCGGCGGUCGCCcgacccGUGAUCa--- -3'
miRNA:   3'- cuuGGGCCGUUAGUGG------CACUGGaagu -5'
8194 5' -53.3 NC_001978.2 + 34015 0.68 0.611529
Target:  5'- aGAcCCCGGUucagaagCGCCGUGAUCUcuUCGc -3'
miRNA:   3'- -CUuGGGCCGuua----GUGGCACUGGA--AGU- -5'
8194 5' -53.3 NC_001978.2 + 9705 0.69 0.561645
Target:  5'- aGGACCCGGCGGagcguaucgcgacCGCUGUGACgcuCUUCGg -3'
miRNA:   3'- -CUUGGGCCGUUa------------GUGGCACUG---GAAGU- -5'
8194 5' -53.3 NC_001978.2 + 20575 0.69 0.554917
Target:  5'- uGAACCCGGCGaccgGUCugCccGACCUg-- -3'
miRNA:   3'- -CUUGGGCCGU----UAGugGcaCUGGAagu -5'
8194 5' -53.3 NC_001978.2 + 8254 0.69 0.52167
Target:  5'- -cGCCCuucGCGGaCGCCGUGACCUUa- -3'
miRNA:   3'- cuUGGGc--CGUUaGUGGCACUGGAAgu -5'
8194 5' -53.3 NC_001978.2 + 27781 0.7 0.468127
Target:  5'- cGAGCCCGGUcGUCuCCGUGuCCa--- -3'
miRNA:   3'- -CUUGGGCCGuUAGuGGCACuGGaagu -5'
8194 5' -53.3 NC_001978.2 + 34684 0.72 0.40784
Target:  5'- cGAACCCGGCAA--GCUG-GGCgUUCAg -3'
miRNA:   3'- -CUUGGGCCGUUagUGGCaCUGgAAGU- -5'
8194 5' -53.3 NC_001978.2 + 23820 0.72 0.388849
Target:  5'- cGACCCGGC-GUCGCCGgaaGCCUgggCAc -3'
miRNA:   3'- cUUGGGCCGuUAGUGGCac-UGGAa--GU- -5'
8194 5' -53.3 NC_001978.2 + 29046 0.73 0.335465
Target:  5'- -uGCCCGuGCGGUCGCCGaguaUGACCgggUCu -3'
miRNA:   3'- cuUGGGC-CGUUAGUGGC----ACUGGa--AGu -5'
8194 5' -53.3 NC_001978.2 + 8119 0.75 0.245337
Target:  5'- aAGCCCGGaCGGUCACCGcGACCcgaagUCGa -3'
miRNA:   3'- cUUGGGCC-GUUAGUGGCaCUGGa----AGU- -5'
8194 5' -53.3 NC_001978.2 + 23535 1.09 0.001115
Target:  5'- cGAACCCGGCAAUCACCGUGACCUUCAc -3'
miRNA:   3'- -CUUGGGCCGUUAGUGGCACUGGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.