miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8195 3' -53.3 NC_001978.2 + 7260 0.66 0.735824
Target:  5'- cGGCGUGAAGaCGACCguUCUUGAgacguCCGa -3'
miRNA:   3'- -CUGCGUUUCcGCUGGguAGAACU-----GGU- -5'
8195 3' -53.3 NC_001978.2 + 20569 0.66 0.735824
Target:  5'- aGAuCGUGAAcccGGCGACCgGUCUgcccGACCu -3'
miRNA:   3'- -CU-GCGUUU---CCGCUGGgUAGAa---CUGGu -5'
8195 3' -53.3 NC_001978.2 + 35557 0.66 0.702453
Target:  5'- gGACGUGAAGGCGAgcgcuCCCA----GGCCGa -3'
miRNA:   3'- -CUGCGUUUCCGCU-----GGGUagaaCUGGU- -5'
8195 3' -53.3 NC_001978.2 + 10880 0.66 0.691163
Target:  5'- cGGCGUccGGGUgGACCCGUgUUGGCgAg -3'
miRNA:   3'- -CUGCGuuUCCG-CUGGGUAgAACUGgU- -5'
8195 3' -53.3 NC_001978.2 + 9769 0.67 0.679811
Target:  5'- aGACGCGuugcugAAGcuCGACCCGUCgucGGCCGu -3'
miRNA:   3'- -CUGCGU------UUCc-GCUGGGUAGaa-CUGGU- -5'
8195 3' -53.3 NC_001978.2 + 22577 0.67 0.645509
Target:  5'- uGACGCAAgugaaggaacuGGGCGAagaCGUCcgGGCCAg -3'
miRNA:   3'- -CUGCGUU-----------UCCGCUgg-GUAGaaCUGGU- -5'
8195 3' -53.3 NC_001978.2 + 36564 0.67 0.643215
Target:  5'- cGACGaCAGAccGGUGAUCCAUCggaacgcgacgGGCCAc -3'
miRNA:   3'- -CUGC-GUUU--CCGCUGGGUAGaa---------CUGGU- -5'
8195 3' -53.3 NC_001978.2 + 29855 0.68 0.622554
Target:  5'- --aGCGGGGGCGACCCuUCcgggUG-CCGa -3'
miRNA:   3'- cugCGUUUCCGCUGGGuAGa---ACuGGU- -5'
8195 3' -53.3 NC_001978.2 + 8863 0.68 0.588217
Target:  5'- uGACGUAAGGGggcgcuguggcuCGACCCAUUcaGAUCAc -3'
miRNA:   3'- -CUGCGUUUCC------------GCUGGGUAGaaCUGGU- -5'
8195 3' -53.3 NC_001978.2 + 22333 0.69 0.543034
Target:  5'- aGACGuCGAAGGCGACgUAUCccGACg- -3'
miRNA:   3'- -CUGC-GUUUCCGCUGgGUAGaaCUGgu -5'
8195 3' -53.3 NC_001978.2 + 17519 0.7 0.477656
Target:  5'- aGACGUugcGGGCGGCuCCGUCUccGCCGa -3'
miRNA:   3'- -CUGCGuu-UCCGCUG-GGUAGAacUGGU- -5'
8195 3' -53.3 NC_001978.2 + 18735 0.75 0.250632
Target:  5'- uACGCGAAGGUGACCUAUCcggaagUGcGCCGa -3'
miRNA:   3'- cUGCGUUUCCGCUGGGUAGa-----AC-UGGU- -5'
8195 3' -53.3 NC_001978.2 + 24864 1.09 0.001049
Target:  5'- cGACGCAAAGGCGACCCAUCUUGACCAc -3'
miRNA:   3'- -CUGCGUUUCCGCUGGGUAGAACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.