miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8195 5' -61.6 NC_001978.2 + 39868 0.66 0.32626
Target:  5'- aGCUcuuCAAGGGcguucaGGGCGUCGGCGCg- -3'
miRNA:   3'- -CGAcucGUUCCC------CCCGCGGCUGCGac -5'
8195 5' -61.6 NC_001978.2 + 29403 0.66 0.32626
Target:  5'- cGCUGAccuaggggGCcgguccuGGGGGucgcuguauGGCGCCGACGUg- -3'
miRNA:   3'- -CGACU--------CGu------UCCCC---------CCGCGGCUGCGac -5'
8195 5' -61.6 NC_001978.2 + 23657 0.66 0.32626
Target:  5'- cGCgucGGCAAGGGuGGCGCUG-UGCUc -3'
miRNA:   3'- -CGac-UCGUUCCCcCCGCGGCuGCGAc -5'
8195 5' -61.6 NC_001978.2 + 107 0.66 0.302658
Target:  5'- cGUUG-GCcuGGGGGGCGCCuggguccGGCgGCUc -3'
miRNA:   3'- -CGACuCGuuCCCCCCGCGG-------CUG-CGAc -5'
8195 5' -61.6 NC_001978.2 + 40717 0.67 0.288853
Target:  5'- aCUGAGCuAGGGaGGCaacGCCGGuCGCUc -3'
miRNA:   3'- cGACUCGuUCCCcCCG---CGGCU-GCGAc -5'
8195 5' -61.6 NC_001978.2 + 32030 0.68 0.218556
Target:  5'- gGCUGAGC--GGGGGcGCGUCGuCgGCUu -3'
miRNA:   3'- -CGACUCGuuCCCCC-CGCGGCuG-CGAc -5'
8195 5' -61.6 NC_001978.2 + 24959 0.69 0.207463
Target:  5'- cCUGAGCAAGGGc-GCGaaGACGCUu -3'
miRNA:   3'- cGACUCGUUCCCccCGCggCUGCGAc -5'
8195 5' -61.6 NC_001978.2 + 18087 0.69 0.201572
Target:  5'- gGCaGcGCAAGcGcGGuuacuccGGCGCCGACGCUGa -3'
miRNA:   3'- -CGaCuCGUUC-C-CC-------CCGCGGCUGCGAC- -5'
8195 5' -61.6 NC_001978.2 + 4386 0.69 0.181844
Target:  5'- --gGGGCA---GGGGCGCCGuCGCUGc -3'
miRNA:   3'- cgaCUCGUuccCCCCGCGGCuGCGAC- -5'
8195 5' -61.6 NC_001978.2 + 24463 0.7 0.177068
Target:  5'- aCUGAGCGgaAGgacuGGGGGCGCuaucuCGACGCg- -3'
miRNA:   3'- cGACUCGU--UC----CCCCCGCG-----GCUGCGac -5'
8195 5' -61.6 NC_001978.2 + 8862 0.7 0.172404
Target:  5'- -aUGAcGUAA-GGGGGCGCUGugGCUc -3'
miRNA:   3'- cgACU-CGUUcCCCCCGCGGCugCGAc -5'
8195 5' -61.6 NC_001978.2 + 33130 0.7 0.172404
Target:  5'- cCUGGGCAAGcGuuGGCacguugccGCCGACGCUGa -3'
miRNA:   3'- cGACUCGUUC-CccCCG--------CGGCUGCGAC- -5'
8195 5' -61.6 NC_001978.2 + 33916 0.72 0.121093
Target:  5'- gGCgGAGCAucGGGGGaGGCGaCCGGCGaaGa -3'
miRNA:   3'- -CGaCUCGU--UCCCC-CCGC-GGCUGCgaC- -5'
8195 5' -61.6 NC_001978.2 + 40999 0.73 0.099718
Target:  5'- -gUGAGUAgguAGGGGGGUGUCGACGg-- -3'
miRNA:   3'- cgACUCGU---UCCCCCCGCGGCUGCgac -5'
8195 5' -61.6 NC_001978.2 + 26105 0.73 0.094296
Target:  5'- --cGAGCAcucaGGGCGCCGACGCUGc -3'
miRNA:   3'- cgaCUCGUucccCCCGCGGCUGCGAC- -5'
8195 5' -61.6 NC_001978.2 + 24899 1.09 0.000162
Target:  5'- cGCUGAGCAAGGGGGGCGCCGACGCUGc -3'
miRNA:   3'- -CGACUCGUUCCCCCCGCGGCUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.