miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8196 5' -56.1 NC_001978.2 + 5630 0.66 0.601655
Target:  5'- cCGGCGccaacgcugccuuCGGUGAGGcUGACGCCGa -3'
miRNA:   3'- aGCUGCau-----------GCCGCUCUcACUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 5537 0.66 0.597207
Target:  5'- cCGACGccggucCGGCcaucGGUGACGCCAUg -3'
miRNA:   3'- aGCUGCau----GCCGcuc-UCACUGCGGUA- -5'
8196 5' -56.1 NC_001978.2 + 2274 0.66 0.597207
Target:  5'- gCGACaGUACGGCGcuuGUGGCuuGCCGc -3'
miRNA:   3'- aGCUG-CAUGCCGCucuCACUG--CGGUa -5'
8196 5' -56.1 NC_001978.2 + 39045 0.66 0.58611
Target:  5'- cCGACGUAaucCGGUGGuGGUGGCGUgAg -3'
miRNA:   3'- aGCUGCAU---GCCGCUcUCACUGCGgUa -5'
8196 5' -56.1 NC_001978.2 + 7675 0.66 0.575052
Target:  5'- cCGACGUACgaaGGCacgcuuGAGGGUGaguucaGCGCCGc -3'
miRNA:   3'- aGCUGCAUG---CCG------CUCUCAC------UGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 20677 0.67 0.55309
Target:  5'- aCGACGUugaGCGGC-AGGG-GGCGCaCAa -3'
miRNA:   3'- aGCUGCA---UGCCGcUCUCaCUGCG-GUa -5'
8196 5' -56.1 NC_001978.2 + 270 0.67 0.531385
Target:  5'- -gGACGUAUGGCGGaacGuGUGGCaaGCCGg -3'
miRNA:   3'- agCUGCAUGCCGCU---CuCACUG--CGGUa -5'
8196 5' -56.1 NC_001978.2 + 15558 0.68 0.458237
Target:  5'- gUCGGCGUagucggGCGGCaGGGGcGACGUCGg -3'
miRNA:   3'- -AGCUGCA------UGCCGcUCUCaCUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 20318 0.68 0.449217
Target:  5'- cUCGACGgucaaggaagcccgcACGGCGcgagagacGGAGcUGACGCCGg -3'
miRNA:   3'- -AGCUGCa--------------UGCCGC--------UCUC-ACUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 12825 0.68 0.448221
Target:  5'- -aGACGUACGGaagcacguCGGcGGGUGGCGUCGg -3'
miRNA:   3'- agCUGCAUGCC--------GCU-CUCACUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 34337 0.68 0.448221
Target:  5'- gCGG-GUAucCGGCGGGuuGUGACGCCGa -3'
miRNA:   3'- aGCUgCAU--GCCGCUCu-CACUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 7984 0.68 0.438327
Target:  5'- cUCGACGUACGugagcuugauuGCGGGcGUcACGCCGUc -3'
miRNA:   3'- -AGCUGCAUGC-----------CGCUCuCAcUGCGGUA- -5'
8196 5' -56.1 NC_001978.2 + 656 0.69 0.409417
Target:  5'- gCGGCGUacACGGCGcGGGUGGCcucaGCCu- -3'
miRNA:   3'- aGCUGCA--UGCCGCuCUCACUG----CGGua -5'
8196 5' -56.1 NC_001978.2 + 23959 0.7 0.381725
Target:  5'- gCGACGggcuucCGGCGGGuacugccacAGUGGCGCCu- -3'
miRNA:   3'- aGCUGCau----GCCGCUC---------UCACUGCGGua -5'
8196 5' -56.1 NC_001978.2 + 20981 0.7 0.381725
Target:  5'- cUGACGgACGGCGAcaagGACGCCAa -3'
miRNA:   3'- aGCUGCaUGCCGCUcucaCUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 39490 0.7 0.381725
Target:  5'- -gGACaagcuGUACuGCGAGuGUGGCGCCGUc -3'
miRNA:   3'- agCUG-----CAUGcCGCUCuCACUGCGGUA- -5'
8196 5' -56.1 NC_001978.2 + 19327 0.71 0.314214
Target:  5'- cCGGCGUGCGGCGgcaaccgggcaucGGAGcgcuacgucccgacgGACGCCGa -3'
miRNA:   3'- aGCUGCAUGCCGC-------------UCUCa--------------CUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 23646 0.72 0.269778
Target:  5'- aCGACGUugagcgcguCGGCaAGGGUGGCGCUGUg -3'
miRNA:   3'- aGCUGCAu--------GCCGcUCUCACUGCGGUA- -5'
8196 5' -56.1 NC_001978.2 + 25655 0.77 0.133111
Target:  5'- gCGcCGUAUGGCGuguuccGGGGUGACGCCGg -3'
miRNA:   3'- aGCuGCAUGCCGC------UCUCACUGCGGUa -5'
8196 5' -56.1 NC_001978.2 + 38042 0.78 0.103007
Target:  5'- aCGACG-ACGGCGAGccGGUGACGCUc- -3'
miRNA:   3'- aGCUGCaUGCCGCUC--UCACUGCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.