miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8197 3' -55.7 NC_001978.2 + 15641 0.66 0.620621
Target:  5'- cGGUucCG-GCGGCUUCGCUGgggcucGACGGCg -3'
miRNA:   3'- cUCA--GCgCGCCGAAGUGGUa-----CUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 29218 0.66 0.620621
Target:  5'- cGGUCGaGCGGCaggCGCCgacccGUGACgGACa -3'
miRNA:   3'- cUCAGCgCGCCGaa-GUGG-----UACUG-CUG- -5'
8197 3' -55.7 NC_001978.2 + 5654 0.66 0.602649
Target:  5'- -uGcCGCGCGGCUgacccgUGCCgguacccgucaggaaGUGGCGACc -3'
miRNA:   3'- cuCaGCGCGCCGAa-----GUGG---------------UACUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 22960 0.66 0.598165
Target:  5'- uAGUCGCGCgucacgGGCgUCACgAUGagcgcgagaaGCGACg -3'
miRNA:   3'- cUCAGCGCG------CCGaAGUGgUAC----------UGCUG- -5'
8197 3' -55.7 NC_001978.2 + 30387 0.66 0.575831
Target:  5'- cGGcUCGCGUGGCagggUGCCGUGucgcuCGACa -3'
miRNA:   3'- cUC-AGCGCGCCGaa--GUGGUACu----GCUG- -5'
8197 3' -55.7 NC_001978.2 + 18816 0.67 0.542712
Target:  5'- uGGGUgCGCGCGGCguucccCGCUAUcGACGcuGCg -3'
miRNA:   3'- -CUCA-GCGCGCCGaa----GUGGUA-CUGC--UG- -5'
8197 3' -55.7 NC_001978.2 + 40908 0.68 0.478619
Target:  5'- --uUUGCGUGGCga-ACCAUGACcaGACg -3'
miRNA:   3'- cucAGCGCGCCGaagUGGUACUG--CUG- -5'
8197 3' -55.7 NC_001978.2 + 36410 0.68 0.478619
Target:  5'- -cGUUGaUGCGGCgUUCAUCAUGGCG-Cu -3'
miRNA:   3'- cuCAGC-GCGCCG-AAGUGGUACUGCuG- -5'
8197 3' -55.7 NC_001978.2 + 18953 0.68 0.472409
Target:  5'- aGAG-CGCGC-GCUUCguucucauaccgaacGuCCGUGACGACg -3'
miRNA:   3'- -CUCaGCGCGcCGAAG---------------U-GGUACUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 30371 0.69 0.428179
Target:  5'- cGAGcCGgGCGGCUucguacacgUCGCCcucGGCGGCu -3'
miRNA:   3'- -CUCaGCgCGCCGA---------AGUGGua-CUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 7370 0.7 0.377397
Target:  5'- uGGGUUGCGUGGCgaccgaauggaGCC-UGACGGCc -3'
miRNA:   3'- -CUCAGCGCGCCGaag--------UGGuACUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 22041 0.7 0.345869
Target:  5'- cGGUCGCGC-GCU--GCCAUGuCGGCa -3'
miRNA:   3'- cUCAGCGCGcCGAagUGGUACuGCUG- -5'
8197 3' -55.7 NC_001978.2 + 431 0.71 0.329188
Target:  5'- cGGUCGCGCacccgauGCUUCGCUAUGuCGAg -3'
miRNA:   3'- cUCAGCGCGc------CGAAGUGGUACuGCUg -5'
8197 3' -55.7 NC_001978.2 + 31345 0.71 0.313107
Target:  5'- -cGUCGcCGuCGGCgUUgGCCGUGACGAa -3'
miRNA:   3'- cuCAGC-GC-GCCG-AAgUGGUACUGCUg -5'
8197 3' -55.7 NC_001978.2 + 32450 0.71 0.30452
Target:  5'- -uGUCGCucgcccaGUGGCUUCACgGUGcCGACu -3'
miRNA:   3'- cuCAGCG-------CGCCGAAGUGgUACuGCUG- -5'
8197 3' -55.7 NC_001978.2 + 28810 0.72 0.290116
Target:  5'- --aUCGCGCGGCgaaUCAuCCAauccGACGACg -3'
miRNA:   3'- cucAGCGCGCCGa--AGU-GGUa---CUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 12256 0.72 0.267771
Target:  5'- -cGUUGCGCGGCUgacgacgUCGgCAgcgGACGGCu -3'
miRNA:   3'- cuCAGCGCGCCGA-------AGUgGUa--CUGCUG- -5'
8197 3' -55.7 NC_001978.2 + 40215 0.73 0.235314
Target:  5'- cGGUCG-GCGGCUUCGCCcacGUGAuCGAa -3'
miRNA:   3'- cUCAGCgCGCCGAAGUGG---UACU-GCUg -5'
8197 3' -55.7 NC_001978.2 + 38168 0.73 0.22911
Target:  5'- -cGUgGCGCGGCUUCcCCGUGcCGGa -3'
miRNA:   3'- cuCAgCGCGCCGAAGuGGUACuGCUg -5'
8197 3' -55.7 NC_001978.2 + 1749 0.75 0.174405
Target:  5'- cGGGUCGUGuCGGCggaCGCCG-GACGGCa -3'
miRNA:   3'- -CUCAGCGC-GCCGaa-GUGGUaCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.