miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8197 5' -54 NC_001978.2 + 26374 1.06 0.001141
Target:  5'- gAUGCACUCAUGACGGAGCUUCGCAGUg -3'
miRNA:   3'- -UACGUGAGUACUGCCUCGAAGCGUCA- -5'
8197 5' -54 NC_001978.2 + 32829 0.7 0.398254
Target:  5'- cGUGCGCUUcUGACGGAGCUgaGCcGa -3'
miRNA:   3'- -UACGUGAGuACUGCCUCGAagCGuCa -5'
8197 5' -54 NC_001978.2 + 18906 0.7 0.437841
Target:  5'- -cGCGCUCuucGUGAcCGGGGCUUCaGCAu- -3'
miRNA:   3'- uaCGUGAG---UACU-GCCUCGAAG-CGUca -5'
8197 5' -54 NC_001978.2 + 24305 0.68 0.534337
Target:  5'- aAUGCGCuUCGUGcCGGGGCUugUCGUcGUu -3'
miRNA:   3'- -UACGUG-AGUACuGCCUCGA--AGCGuCA- -5'
8197 5' -54 NC_001978.2 + 8729 0.67 0.556866
Target:  5'- cGUGCGCg---GcAUGGAGCUUCGCGa- -3'
miRNA:   3'- -UACGUGaguaC-UGCCUCGAAGCGUca -5'
8197 5' -54 NC_001978.2 + 34253 0.66 0.625742
Target:  5'- cAUGCGC-CGUcGGCGGAGCUUgccggagccaCGCuGUa -3'
miRNA:   3'- -UACGUGaGUA-CUGCCUCGAA----------GCGuCA- -5'
8197 5' -54 NC_001978.2 + 21584 0.66 0.648862
Target:  5'- -aGCACguaccGACGGGGCUUCGUc-- -3'
miRNA:   3'- uaCGUGagua-CUGCCUCGAAGCGuca -5'
8197 5' -54 NC_001978.2 + 23068 0.66 0.660403
Target:  5'- -aGCACUCAUGGCGaAGCgUUCGaucuGGg -3'
miRNA:   3'- uaCGUGAGUACUGCcUCG-AAGCg---UCa -5'
8197 5' -54 NC_001978.2 + 39576 0.68 0.511039
Target:  5'- -cGCGCuucgaagUCAUGACGGcGCcacacUCGCAGUa -3'
miRNA:   3'- uaCGUG-------AGUACUGCCuCGa----AGCGUCA- -5'
8197 5' -54 NC_001978.2 + 35353 0.69 0.458462
Target:  5'- cAUGCGgUCcagAUGACGGAGCcgCGCAc- -3'
miRNA:   3'- -UACGUgAG---UACUGCCUCGaaGCGUca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.