miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8198 3' -56.8 NC_001978.2 + 40490 0.66 0.525214
Target:  5'- aGCgu-CACCcGGGCGCCCUUcGCUg- -3'
miRNA:   3'- -UGacuGUGGaUCCGCGGGAGuUGGau -5'
8198 3' -56.8 NC_001978.2 + 17760 0.66 0.525214
Target:  5'- --gGugACCUGGGCGCCaCgugccccgUAGCCg- -3'
miRNA:   3'- ugaCugUGGAUCCGCGG-Ga-------GUUGGau -5'
8198 3' -56.8 NC_001978.2 + 862 0.66 0.503623
Target:  5'- uGCUccGGCGCCUGGGCGCg--CGACUg- -3'
miRNA:   3'- -UGA--CUGUGGAUCCGCGggaGUUGGau -5'
8198 3' -56.8 NC_001978.2 + 20705 0.66 0.492973
Target:  5'- cGCUucuuCGCCUGGGCGUagaCCUCAGCg-- -3'
miRNA:   3'- -UGAcu--GUGGAUCCGCG---GGAGUUGgau -5'
8198 3' -56.8 NC_001978.2 + 11450 0.66 0.471991
Target:  5'- cACgGGCACgCaagcggucGGCGCCgCUCGACCUGa -3'
miRNA:   3'- -UGaCUGUG-Gau------CCGCGG-GAGUUGGAU- -5'
8198 3' -56.8 NC_001978.2 + 9168 0.67 0.411955
Target:  5'- gGCUu-CACCcAGGCGCuuagCCUCAGCCg- -3'
miRNA:   3'- -UGAcuGUGGaUCCGCG----GGAGUUGGau -5'
8198 3' -56.8 NC_001978.2 + 26151 0.68 0.396759
Target:  5'- uGCUcGACACCUGaacGGCGCCgguacggugcgcgacUUCGGCCUu -3'
miRNA:   3'- -UGA-CUGUGGAU---CCGCGG---------------GAGUUGGAu -5'
8198 3' -56.8 NC_001978.2 + 26758 0.68 0.393016
Target:  5'- cACUGACuuuCCguuGGCGCCCUUGcCCc- -3'
miRNA:   3'- -UGACUGu--GGau-CCGCGGGAGUuGGau -5'
8198 3' -56.8 NC_001978.2 + 30842 0.68 0.393016
Target:  5'- cAUUGAguCCaUGGGCGCCaCUCAGCg-- -3'
miRNA:   3'- -UGACUguGG-AUCCGCGG-GAGUUGgau -5'
8198 3' -56.8 NC_001978.2 + 35830 0.68 0.393016
Target:  5'- cUUGACgACCUGGGCGCC---GACCUu -3'
miRNA:   3'- uGACUG-UGGAUCCGCGGgagUUGGAu -5'
8198 3' -56.8 NC_001978.2 + 32385 0.7 0.307181
Target:  5'- -gUGACGCCgucuugcguGGCGCCUUCGGCUc- -3'
miRNA:   3'- ugACUGUGGau-------CCGCGGGAGUUGGau -5'
8198 3' -56.8 NC_001978.2 + 1849 0.71 0.256105
Target:  5'- cGCUGACG-CUGGGCagugccGCCCguaaUCAGCCUAu -3'
miRNA:   3'- -UGACUGUgGAUCCG------CGGG----AGUUGGAU- -5'
8198 3' -56.8 NC_001978.2 + 36092 0.71 0.256105
Target:  5'- cGCcGACACCUGGGCGCgCgaggaAGCCg- -3'
miRNA:   3'- -UGaCUGUGGAUCCGCGgGag---UUGGau -5'
8198 3' -56.8 NC_001978.2 + 13845 0.71 0.236438
Target:  5'- cGCUGAC-CCUguauccGGGCGCCUUCaAGCCc- -3'
miRNA:   3'- -UGACUGuGGA------UCCGCGGGAG-UUGGau -5'
8198 3' -56.8 NC_001978.2 + 32488 0.79 0.067266
Target:  5'- gACUGACgACCUGGG-GCgCUCAACCUAg -3'
miRNA:   3'- -UGACUG-UGGAUCCgCGgGAGUUGGAU- -5'
8198 3' -56.8 NC_001978.2 + 27492 1.06 0.000627
Target:  5'- gACUGACACCUAGGCGCCCUCAACCUAc -3'
miRNA:   3'- -UGACUGUGGAUCCGCGGGAGUUGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.