miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 3' -53.2 NC_001978.2 + 28174 0.67 0.731777
Target:  5'- --cCGCCcaGCCGGUuucuuUCGUGAgccccaGCGACCg -3'
miRNA:   3'- cauGCGGc-UGGCCA-----AGCGCU------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 25207 0.67 0.731777
Target:  5'- uGUGCGCCGGgCacagCGCGAgAUAACCc -3'
miRNA:   3'- -CAUGCGGCUgGccaaGCGCU-UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 5138 0.67 0.725282
Target:  5'- --cCGCCGACCacgacgacgacgccGUUCuucguGCGGGCAACCu -3'
miRNA:   3'- cauGCGGCUGGc-------------CAAG-----CGCUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 367 0.67 0.720933
Target:  5'- -cGCGCCGACCuGUugUCGCucAUcgaAGCCg -3'
miRNA:   3'- caUGCGGCUGGcCA--AGCGcuUG---UUGG- -5'
8199 3' -53.2 NC_001978.2 + 21203 0.67 0.709997
Target:  5'- --uUGUCGACCuGggCGCGAAUcACCu -3'
miRNA:   3'- cauGCGGCUGGcCaaGCGCUUGuUGG- -5'
8199 3' -53.2 NC_001978.2 + 6734 0.67 0.709997
Target:  5'- -gACGCCGGgcaauCCGGUcgaCGCuGAGCGcGCCg -3'
miRNA:   3'- caUGCGGCU-----GGCCAa--GCG-CUUGU-UGG- -5'
8199 3' -53.2 NC_001978.2 + 36004 0.67 0.709997
Target:  5'- --cCGCCGAcCCGGgcgUUGUGuGCGACa -3'
miRNA:   3'- cauGCGGCU-GGCCa--AGCGCuUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 32322 0.67 0.7067
Target:  5'- -gGCGUCGugacCCGGUcgacguugagcgcuUCGCGAAUGGCg -3'
miRNA:   3'- caUGCGGCu---GGCCA--------------AGCGCUUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 30791 0.67 0.698981
Target:  5'- -gACGUCGACaCGGcggCGUGAAgGACg -3'
miRNA:   3'- caUGCGGCUG-GCCaa-GCGCUUgUUGg -5'
8199 3' -53.2 NC_001978.2 + 4907 0.67 0.698981
Target:  5'- -aGCGCCaACUuugaGGcgCGCGAGCGugCg -3'
miRNA:   3'- caUGCGGcUGG----CCaaGCGCUUGUugG- -5'
8199 3' -53.2 NC_001978.2 + 5379 0.67 0.698981
Target:  5'- -gGCGaCCG-CCGGgauugUCGgCGAgACGGCCg -3'
miRNA:   3'- caUGC-GGCuGGCCa----AGC-GCU-UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 39360 0.68 0.687896
Target:  5'- -cGCuCCGGCCGGUcgagcuugaUUGCGGAcCGAUCa -3'
miRNA:   3'- caUGcGGCUGGCCA---------AGCGCUU-GUUGG- -5'
8199 3' -53.2 NC_001978.2 + 34142 0.68 0.687896
Target:  5'- uGUGCGUCcGCCGGagcgugcccaCGUGGGCAACUg -3'
miRNA:   3'- -CAUGCGGcUGGCCaa--------GCGCUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 29949 0.68 0.687896
Target:  5'- -cGCGCCGcCCaGUcCGCcGACGACCn -3'
miRNA:   3'- caUGCGGCuGGcCAaGCGcUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 17300 0.68 0.687896
Target:  5'- aGUGCGCCGACUccccaGCcugaaGAGCAGCCc -3'
miRNA:   3'- -CAUGCGGCUGGccaagCG-----CUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 28106 0.68 0.676757
Target:  5'- -gGCGCCGACgGG-UCGacguaGAACGcACUg -3'
miRNA:   3'- caUGCGGCUGgCCaAGCg----CUUGU-UGG- -5'
8199 3' -53.2 NC_001978.2 + 33866 0.68 0.676757
Target:  5'- --gUGCCGACCGug-CGCGuguacgccgacGACGACCc -3'
miRNA:   3'- cauGCGGCUGGCcaaGCGC-----------UUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 36091 0.68 0.673405
Target:  5'- --cCGCCGACaccugGGcgCGCGAggaagccgaagccgACGACCa -3'
miRNA:   3'- cauGCGGCUGg----CCaaGCGCU--------------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 30746 0.68 0.665572
Target:  5'- -gACGUCGACCgaagGGgaagUUGCcGACGACCu -3'
miRNA:   3'- caUGCGGCUGG----CCa---AGCGcUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 19372 0.68 0.654356
Target:  5'- -gACGCCGACgugacgugcaagCGGUgCGCGAAgAuccuuGCCg -3'
miRNA:   3'- caUGCGGCUG------------GCCAaGCGCUUgU-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.