miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 5' -50.2 NC_001978.2 + 6099 0.69 0.75436
Target:  5'- gCGGGaGUGaccgUCAgaaccuucgcgcCCCGGGCGUCGACAa -3'
miRNA:   3'- -GCCCgCAUa---AGU------------GGGCUUGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 15726 0.7 0.687122
Target:  5'- uGGGCGUAcgugUCGCCguCGAGCccCAGCGa -3'
miRNA:   3'- gCCCGCAUa---AGUGG--GCUUGuaGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 39104 0.7 0.675634
Target:  5'- cCGGGCaGUcaagccgccAUUCACCCGGGCAgCAucACGg -3'
miRNA:   3'- -GCCCG-CA---------UAAGUGGGCUUGUaGU--UGU- -5'
8199 5' -50.2 NC_001978.2 + 32728 0.71 0.652534
Target:  5'- -cGGCGgcUUCcCCCaGGGCGUCAGCGu -3'
miRNA:   3'- gcCCGCauAAGuGGG-CUUGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 1914 0.71 0.629349
Target:  5'- aCGGGCGgcacuGCCC-AGCGUCAGCGc -3'
miRNA:   3'- -GCCCGCauaagUGGGcUUGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 32324 0.71 0.629349
Target:  5'- uGGGCGUcgUgACCCGG---UCGACGu -3'
miRNA:   3'- gCCCGCAuaAgUGGGCUuguAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 30497 0.71 0.629349
Target:  5'- -cGGCGagAUUCGCCCGAAgGUCGGuCGg -3'
miRNA:   3'- gcCCGCa-UAAGUGGGCUUgUAGUU-GU- -5'
8199 5' -50.2 NC_001978.2 + 10085 0.72 0.59462
Target:  5'- gGGGCGU--UCAgUCGAcCAUCAACGc -3'
miRNA:   3'- gCCCGCAuaAGUgGGCUuGUAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 18333 0.72 0.560207
Target:  5'- uGGGCGaagGcUCACCCGAAgGUCGuCAc -3'
miRNA:   3'- gCCCGCa--UaAGUGGGCUUgUAGUuGU- -5'
8199 5' -50.2 NC_001978.2 + 25487 0.73 0.548851
Target:  5'- uGGGCGacgUCgaGCCCGAACcgGUCGGCGg -3'
miRNA:   3'- gCCCGCauaAG--UGGGCUUG--UAGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 26810 0.77 0.336719
Target:  5'- aGGGCGUcgUCuucgugaugcGCCCGAACAcguccgUCAGCGu -3'
miRNA:   3'- gCCCGCAuaAG----------UGGGCUUGU------AGUUGU- -5'
8199 5' -50.2 NC_001978.2 + 28653 1.1 0.002189
Target:  5'- aCGGGCGUAUUCACCCGAACAUCAACAc -3'
miRNA:   3'- -GCCCGCAUAAGUGGGCUUGUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.