Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
82 | 3' | -44.9 | AC_000005.1 | + | 10524 | 0.69 | 0.954266 |
Target: 5'- -cAUUGGAGUUGGAAgaaggagaAGGCAuaGCCc -3' miRNA: 3'- caUAAUUUCAACCUUg-------UCUGUggCGG- -5' |
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82 | 3' | -44.9 | AC_000005.1 | + | 8979 | 0.71 | 0.898072 |
Target: 5'- ---cUGGAGUUGcGAGCuGcCACCGUCa -3' miRNA: 3'- cauaAUUUCAAC-CUUGuCuGUGGCGG- -5' |
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82 | 3' | -44.9 | AC_000005.1 | + | 18566 | 0.71 | 0.890127 |
Target: 5'- -------uGUUGGGACAGcaaGCAgCGCCa -3' miRNA: 3'- cauaauuuCAACCUUGUC---UGUgGCGG- -5' |
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82 | 3' | -44.9 | AC_000005.1 | + | 18196 | 1.13 | 0.003978 |
Target: 5'- gGUAUUAAAGUUGGAACAGACACCGCCc -3' miRNA: 3'- -CAUAAUUUCAACCUUGUCUGUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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