Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8200 | 3' | -55.1 | NC_001978.2 | + | 29547 | 1.13 | 0.000411 |
Target: 5'- cUGACACCCCACCUAAGCCCCGUUACCg -3' miRNA: 3'- -ACUGUGGGGUGGAUUCGGGGCAAUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 507 | 0.68 | 0.548537 |
Target: 5'- -cACGCCUgaagcgcguaugCGCCUGGGCaUCGUUGCCg -3' miRNA: 3'- acUGUGGG------------GUGGAUUCGgGGCAAUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 36742 | 0.68 | 0.552925 |
Target: 5'- cGGCGCCCCAggccguucaggacguCCUuccgGAGCCgacgCCGgaGCCu -3' miRNA: 3'- aCUGUGGGGU---------------GGA----UUCGG----GGCaaUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 4052 | 0.66 | 0.62643 |
Target: 5'- aUGACGCCCCugCccgacggauUGGGCgagaaguaCCGggUGCCg -3' miRNA: 3'- -ACUGUGGGGugG---------AUUCGg-------GGCa-AUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 36669 | 0.66 | 0.653361 |
Target: 5'- cUGAgCGCCCCugagccggucgcggaACCUGAGCCgguaCCGgcggaGCCu -3' miRNA: 3'- -ACU-GUGGGG---------------UGGAUUCGG----GGCaa---UGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 28212 | 0.66 | 0.660081 |
Target: 5'- uUGACGCCgaacacgcgCGCCUGAGCaUCCG--GCCg -3' miRNA: 3'- -ACUGUGGg--------GUGGAUUCG-GGGCaaUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 38262 | 0.66 | 0.660081 |
Target: 5'- cGGCaACCCuCAgCggauGCCCCGggGCUu -3' miRNA: 3'- aCUG-UGGG-GUgGauu-CGGGGCaaUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 29854 | 0.66 | 0.670143 |
Target: 5'- aGugACCCCGgucacucCCU--GCCCgGgUUGCCg -3' miRNA: 3'- aCugUGGGGU-------GGAuuCGGGgC-AAUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 24390 | 0.66 | 0.671259 |
Target: 5'- cGACGCUgCGCCU--GCCCUGggcgACg -3' miRNA: 3'- aCUGUGGgGUGGAuuCGGGGCaa--UGg -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 17623 | 0.68 | 0.548537 |
Target: 5'- cUGACAagCCCG-CUGAGCCguCCGgaGCCg -3' miRNA: 3'- -ACUGUg-GGGUgGAUUCGG--GGCaaUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 32853 | 0.68 | 0.537616 |
Target: 5'- cGACACCgaCACCUGAGCUUcagCGUUGu- -3' miRNA: 3'- aCUGUGGg-GUGGAUUCGGG---GCAAUgg -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 22931 | 0.79 | 0.116281 |
Target: 5'- gGACcaauCCCaCACCUGAGCCCCucagUGCCu -3' miRNA: 3'- aCUGu---GGG-GUGGAUUCGGGGca--AUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 34355 | 0.77 | 0.145977 |
Target: 5'- gUGACGCCgaCCACuucgcacacuuuCUGAGCCCCGggggUGCCu -3' miRNA: 3'- -ACUGUGG--GGUG------------GAUUCGGGGCa---AUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 34648 | 0.77 | 0.145977 |
Target: 5'- cGACGCCga--CUGAGCCCCGUUGCa -3' miRNA: 3'- aCUGUGGggugGAUUCGGGGCAAUGg -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 35582 | 0.76 | 0.176009 |
Target: 5'- cGGCGCCCCugagcgucggcgcgACCgAAGaCCCCGggACCg -3' miRNA: 3'- aCUGUGGGG--------------UGGaUUC-GGGGCaaUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 21539 | 0.69 | 0.462647 |
Target: 5'- cGACGCCugagcgcccgucuCCGCCcccaacAGCCCCGUcgggucagcacgUACCg -3' miRNA: 3'- aCUGUGG-------------GGUGGau----UCGGGGCA------------AUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 27825 | 0.69 | 0.463666 |
Target: 5'- gGACGCUUCGCCgAAGCCgCCGacuacgUACUg -3' miRNA: 3'- aCUGUGGGGUGGaUUCGG-GGCa-----AUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 35948 | 0.69 | 0.484287 |
Target: 5'- aGGCGgCUCGCCUGAGUaCCCGUaugaagaaGCCu -3' miRNA: 3'- aCUGUgGGGUGGAUUCG-GGGCAa-------UGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 38216 | 0.68 | 0.494761 |
Target: 5'- cGACGCCCC-UCUAuGgCCCG-UACUg -3' miRNA: 3'- aCUGUGGGGuGGAUuCgGGGCaAUGG- -5' |
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8200 | 3' | -55.1 | NC_001978.2 | + | 9270 | 0.73 | 0.265667 |
Target: 5'- cGuCGCUCCgGCCggaacGAGCCCCuGUUGCCa -3' miRNA: 3'- aCuGUGGGG-UGGa----UUCGGGG-CAAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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