miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8200 5' -50.2 NC_001978.2 + 37245 0.66 0.89889
Target:  5'- aUCGGgcgGACGGcGCU-CcGUCAgGUGCu -3'
miRNA:   3'- -AGCCa--UUGCCcCGAaGaCAGUaUACG- -5'
8200 5' -50.2 NC_001978.2 + 35451 0.66 0.89889
Target:  5'- gCGGUu-UGGGGCUUCaaUGcuugCAUgGUGCa -3'
miRNA:   3'- aGCCAuuGCCCCGAAG--ACa---GUA-UACG- -5'
8200 5' -50.2 NC_001978.2 + 41405 0.66 0.875608
Target:  5'- -aGGggGCGGGGCggcuccgaagUUGgcggCGUGUGCc -3'
miRNA:   3'- agCCauUGCCCCGaa--------GACa---GUAUACG- -5'
8200 5' -50.2 NC_001978.2 + 9994 0.67 0.858674
Target:  5'- aCGGU--CGGcGGCUUCgUGUCGga-GCa -3'
miRNA:   3'- aGCCAuuGCC-CCGAAG-ACAGUauaCG- -5'
8200 5' -50.2 NC_001978.2 + 34716 0.67 0.849806
Target:  5'- cCGGgugcAACGGGGCUcagUCgg-CGUcgGCu -3'
miRNA:   3'- aGCCa---UUGCCCCGA---AGacaGUAuaCG- -5'
8200 5' -50.2 NC_001978.2 + 29121 0.68 0.801863
Target:  5'- gCGcGgcACGGGGCU--UGUCAcUGUGUc -3'
miRNA:   3'- aGC-CauUGCCCCGAagACAGU-AUACG- -5'
8200 5' -50.2 NC_001978.2 + 21576 0.72 0.595516
Target:  5'- gUCGGgucagcacguaccGACGGGGCUUC-GUCA--UGCc -3'
miRNA:   3'- -AGCCa------------UUGCCCCGAAGaCAGUauACG- -5'
8200 5' -50.2 NC_001978.2 + 30919 0.76 0.385703
Target:  5'- aCGGUGACGGGuGCgacaUGaaggCAUGUGCg -3'
miRNA:   3'- aGCCAUUGCCC-CGaag-ACa---GUAUACG- -5'
8200 5' -50.2 NC_001978.2 + 9473 0.77 0.306966
Target:  5'- aCGGcAAUGGGGCUUCUGUCucaggGUc -3'
miRNA:   3'- aGCCaUUGCCCCGAAGACAGuaua-CG- -5'
8200 5' -50.2 NC_001978.2 + 29616 0.8 0.209906
Target:  5'- aUCGGUAACGGGGCUUagguggggUGUCAgAUGa -3'
miRNA:   3'- -AGCCAUUGCCCCGAAg-------ACAGUaUACg -5'
8200 5' -50.2 NC_001978.2 + 29582 1.12 0.001409
Target:  5'- uUCGGUAACGGGGCUUCUGUCAUAUGCc -3'
miRNA:   3'- -AGCCAUUGCCCCGAAGACAGUAUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.