miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8201 3' -60.3 NC_001978.2 + 17320 0.66 0.389327
Target:  5'- -aCACgaagCCgUGCgCGGGUagugcGCCGACUc -3'
miRNA:   3'- caGUGa---GGgACGgGCCCAa----CGGCUGA- -5'
8201 3' -60.3 NC_001978.2 + 19718 0.66 0.380452
Target:  5'- uGUCGaaggcgUCCUUGCgCGGGUcGCUGACc -3'
miRNA:   3'- -CAGUg-----AGGGACGgGCCCAaCGGCUGa -5'
8201 3' -60.3 NC_001978.2 + 40620 0.67 0.322208
Target:  5'- gGUCACUcCCCUGaucucuCCCaGGGUUGagcgaCCGGCg -3'
miRNA:   3'- -CAGUGA-GGGAC------GGG-CCCAAC-----GGCUGa -5'
8201 3' -60.3 NC_001978.2 + 35886 0.68 0.2806
Target:  5'- cGUCAUgcugCCCUuCCCGGGgcacaaccacgaaGCCGACg -3'
miRNA:   3'- -CAGUGa---GGGAcGGGCCCaa-----------CGGCUGa -5'
8201 3' -60.3 NC_001978.2 + 19400 0.68 0.25099
Target:  5'- -gCGCUCCgaUGCCC-GGUUGCCGcCg -3'
miRNA:   3'- caGUGAGGg-ACGGGcCCAACGGCuGa -5'
8201 3' -60.3 NC_001978.2 + 25002 0.7 0.209244
Target:  5'- uUCGgUCCgaagcccgccgaCUGagCCGGGUUGCCGACUc -3'
miRNA:   3'- cAGUgAGG------------GACg-GGCCCAACGGCUGA- -5'
8201 3' -60.3 NC_001978.2 + 20937 0.7 0.209244
Target:  5'- cUCgAUUCCCUGCCCGGcGUacaGCCGGu- -3'
miRNA:   3'- cAG-UGAGGGACGGGCC-CAa--CGGCUga -5'
8201 3' -60.3 NC_001978.2 + 28405 0.7 0.198468
Target:  5'- cGUCaACUCCggcGCCCaGGUUGCCGAa- -3'
miRNA:   3'- -CAG-UGAGGga-CGGGcCCAACGGCUga -5'
8201 3' -60.3 NC_001978.2 + 22631 0.7 0.183212
Target:  5'- -aCGCgCCCgGUagCGGGUUGCCGACUc -3'
miRNA:   3'- caGUGaGGGaCGg-GCCCAACGGCUGA- -5'
8201 3' -60.3 NC_001978.2 + 36171 0.72 0.143514
Target:  5'- gGUUGgUUCUaGuCCCGGGUUGCCGACUc -3'
miRNA:   3'- -CAGUgAGGGaC-GGGCCCAACGGCUGA- -5'
8201 3' -60.3 NC_001978.2 + 27547 0.73 0.111827
Target:  5'- -gCAUUCCC---CCGGGUUGCCGACUc -3'
miRNA:   3'- caGUGAGGGacgGGCCCAACGGCUGA- -5'
8201 3' -60.3 NC_001978.2 + 31145 0.74 0.102805
Target:  5'- -gCACgUUCC-GcCCCGGGUUGCCGACUu -3'
miRNA:   3'- caGUG-AGGGaC-GGGCCCAACGGCUGA- -5'
8201 3' -60.3 NC_001978.2 + 22993 0.75 0.084352
Target:  5'- -gCGCguuguaCC-GCCCGGGUUGCCGACg -3'
miRNA:   3'- caGUGag----GGaCGGGCCCAACGGCUGa -5'
8201 3' -60.3 NC_001978.2 + 29863 1.06 0.000342
Target:  5'- gGUCACUCCCUGCCCGGGUUGCCGACUu -3'
miRNA:   3'- -CAGUGAGGGACGGGCCCAACGGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.