miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8201 5' -51 NC_001978.2 + 4646 0.66 0.848012
Target:  5'- uGAGaCGGGGCuuCCCGuucGGGAGAu- -3'
miRNA:   3'- cUUCaGCUCUGuuGGGUu--CCCUCUuu -5'
8201 5' -51 NC_001978.2 + 40696 0.68 0.745657
Target:  5'- -cGGUCGcu-CAACCCu-GGGAGAGAu -3'
miRNA:   3'- cuUCAGCucuGUUGGGuuCCCUCUUU- -5'
8201 5' -51 NC_001978.2 + 25548 0.68 0.734478
Target:  5'- cGAAGUCGGGccagucAUAACCCugccgucGGGGGAGu -3'
miRNA:   3'- -CUUCAGCUC------UGUUGGGuu-----CCCUCUUu -5'
8201 5' -51 NC_001978.2 + 29932 0.7 0.595071
Target:  5'- gGAAGUCG--GCAACCCGggcAGGGAGu-- -3'
miRNA:   3'- -CUUCAGCucUGUUGGGU---UCCCUCuuu -5'
8201 5' -51 NC_001978.2 + 31214 0.7 0.571783
Target:  5'- gGAAGUCG--GCAACCCGGGGcGGAAc -3'
miRNA:   3'- -CUUCAGCucUGUUGGGUUCCcUCUUu -5'
8201 5' -51 NC_001978.2 + 20123 0.71 0.537296
Target:  5'- --cGUUGAgGGCGACgaCAAGGGAGAGAa -3'
miRNA:   3'- cuuCAGCU-CUGUUGg-GUUCCCUCUUU- -5'
8201 5' -51 NC_001978.2 + 27611 0.73 0.449522
Target:  5'- gGGAGUCG--GCAACCCGGGGGAa--- -3'
miRNA:   3'- -CUUCAGCucUGUUGGGUUCCCUcuuu -5'
8201 5' -51 NC_001978.2 + 29898 1.06 0.002459
Target:  5'- cGAAGUCGAGACAACCCAAGGGAGAAAc -3'
miRNA:   3'- -CUUCAGCUCUGUUGGGUUCCCUCUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.