Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8201 | 5' | -51 | NC_001978.2 | + | 4646 | 0.66 | 0.848012 |
Target: 5'- uGAGaCGGGGCuuCCCGuucGGGAGAu- -3' miRNA: 3'- cUUCaGCUCUGuuGGGUu--CCCUCUuu -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 40696 | 0.68 | 0.745657 |
Target: 5'- -cGGUCGcu-CAACCCu-GGGAGAGAu -3' miRNA: 3'- cuUCAGCucuGUUGGGuuCCCUCUUU- -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 25548 | 0.68 | 0.734478 |
Target: 5'- cGAAGUCGGGccagucAUAACCCugccgucGGGGGAGu -3' miRNA: 3'- -CUUCAGCUC------UGUUGGGuu-----CCCUCUUu -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 29932 | 0.7 | 0.595071 |
Target: 5'- gGAAGUCG--GCAACCCGggcAGGGAGu-- -3' miRNA: 3'- -CUUCAGCucUGUUGGGU---UCCCUCuuu -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 31214 | 0.7 | 0.571783 |
Target: 5'- gGAAGUCG--GCAACCCGGGGcGGAAc -3' miRNA: 3'- -CUUCAGCucUGUUGGGUUCCcUCUUu -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 20123 | 0.71 | 0.537296 |
Target: 5'- --cGUUGAgGGCGACgaCAAGGGAGAGAa -3' miRNA: 3'- cuuCAGCU-CUGUUGg-GUUCCCUCUUU- -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 27611 | 0.73 | 0.449522 |
Target: 5'- gGGAGUCG--GCAACCCGGGGGAa--- -3' miRNA: 3'- -CUUCAGCucUGUUGGGUUCCCUcuuu -5' |
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8201 | 5' | -51 | NC_001978.2 | + | 29898 | 1.06 | 0.002459 |
Target: 5'- cGAAGUCGAGACAACCCAAGGGAGAAAc -3' miRNA: 3'- -CUUCAGCUCUGUUGGGUUCCCUCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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