miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 3' -57.6 NC_001978.2 + 341 0.69 0.39722
Target:  5'- aCCGGcuugccacacguUCCGCCauACGuCCUUGCCGgucGCCu -3'
miRNA:   3'- -GGUC------------AGGCGGc-UGCuGGAACGGC---UGG- -5'
8202 3' -57.6 NC_001978.2 + 1548 0.69 0.387403
Target:  5'- aCCAuugCCGCCG-CGAucaugcuuuaccaCCUgauaGCCGACCg -3'
miRNA:   3'- -GGUca-GGCGGCuGCU-------------GGAa---CGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 1812 0.67 0.483181
Target:  5'- uCCGgcGUCCGCCGAcaCGACCcgguaagUGuuGuCCu -3'
miRNA:   3'- -GGU--CAGGCGGCU--GCUGGa------ACggCuGG- -5'
8202 3' -57.6 NC_001978.2 + 2638 0.68 0.434235
Target:  5'- gCCGGguugCCGUCGugG-CUcaGUCGACCg -3'
miRNA:   3'- -GGUCa---GGCGGCugCuGGaaCGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 2673 0.71 0.282541
Target:  5'- --cGUCgCGCCGGaagauCGACCUUGCCGuugcaauggugcucGCCg -3'
miRNA:   3'- gguCAG-GCGGCU-----GCUGGAACGGC--------------UGG- -5'
8202 3' -57.6 NC_001978.2 + 3901 0.71 0.284655
Target:  5'- uUCuGUUCGCCGA-GACg--GCCGACCg -3'
miRNA:   3'- -GGuCAGGCGGCUgCUGgaaCGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 4553 0.66 0.534631
Target:  5'- aCCA-UCCGCCuucACGGUCUUcGCCGACUc -3'
miRNA:   3'- -GGUcAGGCGGc--UGCUGGAA-CGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 4804 0.69 0.406283
Target:  5'- cCCAG-CCGgaCGGCGACgUUGCCccGGCUu -3'
miRNA:   3'- -GGUCaGGCg-GCUGCUGgAACGG--CUGG- -5'
8202 3' -57.6 NC_001978.2 + 5491 0.67 0.513791
Target:  5'- -gAGUUCGCCacuGAucagguucuUGACCUUGUCGGCUu -3'
miRNA:   3'- ggUCAGGCGG---CU---------GCUGGAACGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 5661 0.69 0.370825
Target:  5'- gUCAGgaugCCGCgCGGCuGACCcgUGCCGguACCc -3'
miRNA:   3'- -GGUCa---GGCG-GCUG-CUGGa-ACGGC--UGG- -5'
8202 3' -57.6 NC_001978.2 + 5911 0.71 0.29179
Target:  5'- gCCGucGUCCGUCucaACGACCUUGCCGuugaagguguCCg -3'
miRNA:   3'- -GGU--CAGGCGGc--UGCUGGAACGGCu---------GG- -5'
8202 3' -57.6 NC_001978.2 + 5995 0.71 0.299065
Target:  5'- uUCAG-CgCGCCGACGGucuUCUUGUCGACg -3'
miRNA:   3'- -GGUCaG-GCGGCUGCU---GGAACGGCUGg -5'
8202 3' -57.6 NC_001978.2 + 6642 0.66 0.545164
Target:  5'- aCGGUaga-CGACGACCUUGCCc-CCg -3'
miRNA:   3'- gGUCAggcgGCUGCUGGAACGGcuGG- -5'
8202 3' -57.6 NC_001978.2 + 7163 0.66 0.566419
Target:  5'- aCCGGcCCggaaGCCGACaGACUcaaucgGCuCGACCg -3'
miRNA:   3'- -GGUCaGG----CGGCUG-CUGGaa----CG-GCUGG- -5'
8202 3' -57.6 NC_001978.2 + 7647 0.68 0.434235
Target:  5'- cCCAGUUCGCCGgucagcucaaGCGACgUcGCgucgaacuCGACCa -3'
miRNA:   3'- -GGUCAGGCGGC----------UGCUGgAaCG--------GCUGG- -5'
8202 3' -57.6 NC_001978.2 + 8141 0.67 0.503495
Target:  5'- aUCAGaacUUCGCCGGaaGCCUUGuuGGCUu -3'
miRNA:   3'- -GGUC---AGGCGGCUgcUGGAACggCUGG- -5'
8202 3' -57.6 NC_001978.2 + 9052 0.7 0.321729
Target:  5'- gCGGgaagCCGggaaCGACGuCCUUGCCGcCCa -3'
miRNA:   3'- gGUCa---GGCg---GCUGCuGGAACGGCuGG- -5'
8202 3' -57.6 NC_001978.2 + 9697 0.68 0.424793
Target:  5'- aCCGGUCCGCCcugggcaAUGGCCUUcgucaucucggcGCCGuucaGCCc -3'
miRNA:   3'- -GGUCAGGCGGc------UGCUGGAA------------CGGC----UGG- -5'
8202 3' -57.6 NC_001978.2 + 9874 0.68 0.434235
Target:  5'- gCCG---CGCCGuCGACCUUGCCcagcgucucaacGGCCg -3'
miRNA:   3'- -GGUcagGCGGCuGCUGGAACGG------------CUGG- -5'
8202 3' -57.6 NC_001978.2 + 10696 0.67 0.513791
Target:  5'- aCCGGcgCUGagcaaCGACGACgcUGCCGACa -3'
miRNA:   3'- -GGUCa-GGCg----GCUGCUGgaACGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.