miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 3' -57.6 NC_001978.2 + 23885 0.67 0.513791
Target:  5'- cCCAGgcuUCCGgCGACG-CCggGUCGAgCg -3'
miRNA:   3'- -GGUC---AGGCgGCUGCuGGaaCGGCUgG- -5'
8202 3' -57.6 NC_001978.2 + 13115 0.67 0.503495
Target:  5'- aCGGUaggaaUGCCGcuCGACgcUGCCGACCc -3'
miRNA:   3'- gGUCAg----GCGGCu-GCUGgaACGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 20012 0.67 0.503495
Target:  5'- gCuGUgCGCCGG-GugCUcgaaggucgUGCCGACCg -3'
miRNA:   3'- gGuCAgGCGGCUgCugGA---------ACGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 12565 0.67 0.503495
Target:  5'- aCCGGgaaCGCCGACGAgaCggcagcacUGCCGcCCa -3'
miRNA:   3'- -GGUCag-GCGGCUGCUg-Ga-------ACGGCuGG- -5'
8202 3' -57.6 NC_001978.2 + 12216 0.67 0.503495
Target:  5'- cCCAG-CCGugcccCCGAUaagGACCgugccggaGCCGACCg -3'
miRNA:   3'- -GGUCaGGC-----GGCUG---CUGGaa------CGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 8141 0.67 0.503495
Target:  5'- aUCAGaacUUCGCCGGaaGCCUUGuuGGCUu -3'
miRNA:   3'- -GGUC---AGGCGGCUgcUGGAACggCUGG- -5'
8202 3' -57.6 NC_001978.2 + 18640 0.67 0.49329
Target:  5'- gCCGGagacgcgCC-CCGACGGaauCCUUGCcCGACUg -3'
miRNA:   3'- -GGUCa------GGcGGCUGCU---GGAACG-GCUGG- -5'
8202 3' -57.6 NC_001978.2 + 34251 0.67 0.49329
Target:  5'- gUCAugcgCCGUCGGCGGagCUUGCCGgaGCCa -3'
miRNA:   3'- -GGUca--GGCGGCUGCUg-GAACGGC--UGG- -5'
8202 3' -57.6 NC_001978.2 + 1812 0.67 0.483181
Target:  5'- uCCGgcGUCCGCCGAcaCGACCcgguaagUGuuGuCCu -3'
miRNA:   3'- -GGU--CAGGCGGCU--GCUGGa------ACggCuGG- -5'
8202 3' -57.6 NC_001978.2 + 19745 0.67 0.473173
Target:  5'- cCCAGUCCauGCCcagcgcGCGAgCCUUGUCGAa- -3'
miRNA:   3'- -GGUCAGG--CGGc-----UGCU-GGAACGGCUgg -5'
8202 3' -57.6 NC_001978.2 + 31655 0.68 0.46327
Target:  5'- cCCAGcccuUUCGCCGACGAcgcCCUUuaUGACa -3'
miRNA:   3'- -GGUC----AGGCGGCUGCU---GGAAcgGCUGg -5'
8202 3' -57.6 NC_001978.2 + 12893 0.68 0.46327
Target:  5'- gCCAc-CCGCCGACGugCUUccguacGuCUGACCc -3'
miRNA:   3'- -GGUcaGGCGGCUGCugGAA------C-GGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 21241 0.68 0.46327
Target:  5'- --cGUUCGCCGucuugaccuucGCGaagcgcuuaccgGCCUUGUCGACCu -3'
miRNA:   3'- gguCAGGCGGC-----------UGC------------UGGAACGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 12082 0.68 0.453477
Target:  5'- gCCAGUCgGCaagcugaGACGcGCCauaGCCGACg -3'
miRNA:   3'- -GGUCAGgCGg------CUGC-UGGaa-CGGCUGg -5'
8202 3' -57.6 NC_001978.2 + 35650 0.68 0.453477
Target:  5'- uUCGGUCgCGCCGACGcucaggggcGCCgucuCCGGCUc -3'
miRNA:   3'- -GGUCAG-GCGGCUGC---------UGGaac-GGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 30763 0.68 0.443797
Target:  5'- -aAGU-UGCCGACGACCUucgugacguucgUGaCGACCg -3'
miRNA:   3'- ggUCAgGCGGCUGCUGGA------------ACgGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 36974 0.68 0.443797
Target:  5'- ---uUCCGCaCGGUGGCagggUGCCGACCg -3'
miRNA:   3'- ggucAGGCG-GCUGCUGga--ACGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 15504 0.68 0.443797
Target:  5'- nCCGacuaCGCCGACGuACgUUGCCGuCCc -3'
miRNA:   3'- -GGUcag-GCGGCUGC-UGgAACGGCuGG- -5'
8202 3' -57.6 NC_001978.2 + 20410 0.68 0.434235
Target:  5'- gCCGGUCgGCCGACGuc---GCCGAa- -3'
miRNA:   3'- -GGUCAGgCGGCUGCuggaaCGGCUgg -5'
8202 3' -57.6 NC_001978.2 + 2638 0.68 0.434235
Target:  5'- gCCGGguugCCGUCGugG-CUcaGUCGACCg -3'
miRNA:   3'- -GGUCa---GGCGGCugCuGGaaCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.