miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 3' -58 NC_001978.2 + 29131 0.66 0.46647
Target:  5'- gGGCUUGUcacuguguccgucACGGGUCGgcgCCUGCCGc- -3'
miRNA:   3'- gCCGAGCG-------------UGUCUAGUa--GGGCGGCuu -5'
8203 3' -58 NC_001978.2 + 10034 0.66 0.457395
Target:  5'- aGGUugUCGCugGGAUUAUCaCgGCCGu- -3'
miRNA:   3'- gCCG--AGCGugUCUAGUAG-GgCGGCuu -5'
8203 3' -58 NC_001978.2 + 1076 0.66 0.437575
Target:  5'- -cGCUUGCugGGAagccuuccgggUCGUcgccCCCGCCGAGa -3'
miRNA:   3'- gcCGAGCGugUCU-----------AGUA----GGGCGGCUU- -5'
8203 3' -58 NC_001978.2 + 12296 0.66 0.437575
Target:  5'- gGGCUCGCGauugAGGUCGUgcaggguacgCCUGCCGc- -3'
miRNA:   3'- gCCGAGCGUg---UCUAGUA----------GGGCGGCuu -5'
8203 3' -58 NC_001978.2 + 22029 0.67 0.418258
Target:  5'- gCGGCUCGCcgguACAcGAagGUUCgCGCCGAc -3'
miRNA:   3'- -GCCGAGCG----UGU-CUagUAGG-GCGGCUu -5'
8203 3' -58 NC_001978.2 + 34533 0.67 0.408795
Target:  5'- uGGCUCGC-CGG-UCcgacCCUGCCGGAc -3'
miRNA:   3'- gCCGAGCGuGUCuAGua--GGGCGGCUU- -5'
8203 3' -58 NC_001978.2 + 11719 0.67 0.381226
Target:  5'- gCGGCUUaC-CGGGUCGUCCggCGCCGGu -3'
miRNA:   3'- -GCCGAGcGuGUCUAGUAGG--GCGGCUu -5'
8203 3' -58 NC_001978.2 + 1598 0.68 0.346447
Target:  5'- -cGCUCaGCgACAGAUCAUCgCUGCCGc- -3'
miRNA:   3'- gcCGAG-CG-UGUCUAGUAG-GGCGGCuu -5'
8203 3' -58 NC_001978.2 + 19076 0.69 0.321892
Target:  5'- cCGcGCUCGCGCuAGcaccuUCGgccCCCGCCGAc -3'
miRNA:   3'- -GC-CGAGCGUG-UCu----AGUa--GGGCGGCUu -5'
8203 3' -58 NC_001978.2 + 5118 0.69 0.298661
Target:  5'- gGGCUCcgGCGCucagCGUUCCGCCGAc -3'
miRNA:   3'- gCCGAG--CGUGucuaGUAGGGCGGCUu -5'
8203 3' -58 NC_001978.2 + 25525 0.75 0.112595
Target:  5'- cCGGUUccCGCGCAuGGUCGUUCCGCUGAAg -3'
miRNA:   3'- -GCCGA--GCGUGU-CUAGUAGGGCGGCUU- -5'
8203 3' -58 NC_001978.2 + 30323 1.06 0.000533
Target:  5'- cCGGCUCGCACAGAUCAUCCCGCCGAAg -3'
miRNA:   3'- -GCCGAGCGUGUCUAGUAGGGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.