Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 28914 | 0.68 | 0.525214 |
Target: 5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3' miRNA: 3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 20233 | 0.68 | 0.514373 |
Target: 5'- aGACgguugaGGCcgugAAGGAAgcCGCCGAAGCCg -3' miRNA: 3'- -CUGag----UCG----UUCCUUgcGCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 18128 | 0.68 | 0.536141 |
Target: 5'- uGGCcCGGUAAgaccacguGGGACGCGCUGAAGgucCCg -3' miRNA: 3'- -CUGaGUCGUU--------CCUUGCGCGGCUUC---GG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 40103 | 0.68 | 0.562671 |
Target: 5'- cGACUacgggcagggGGCAGGGAacgcccaucgagaaGCGCGCuucgaucacgugggCGAAGCCg -3' miRNA: 3'- -CUGAg---------UCGUUCCU--------------UGCGCG--------------GCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 9093 | 0.68 | 0.503623 |
Target: 5'- cGACUcCGGCuGAGGcuaaGCGCCuggguGAAGCCg -3' miRNA: 3'- -CUGA-GUCG-UUCCuug-CGCGG-----CUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 24813 | 0.67 | 0.56936 |
Target: 5'- uGACUCAGgGuguGGcgcuuguCGCGCgGAAGCUu -3' miRNA: 3'- -CUGAGUCgUu--CCuu-----GCGCGgCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 22698 | 0.67 | 0.56936 |
Target: 5'- gGAgUCGGCAacccgcuaccGGGcGCGuCGCUGAGuGCCg -3' miRNA: 3'- -CUgAGUCGU----------UCCuUGC-GCGGCUU-CGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 21316 | 0.67 | 0.56936 |
Target: 5'- cGCUCAGguCAAGGucgAACGCGUCGGcGGCa -3' miRNA: 3'- cUGAGUC--GUUCC---UUGCGCGGCU-UCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 20832 | 0.67 | 0.568244 |
Target: 5'- gGACUCuuuGCGGuccGGAccgucgaACGCGC-GGAGCCa -3' miRNA: 3'- -CUGAGu--CGUU---CCU-------UGCGCGgCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 14487 | 0.67 | 0.614364 |
Target: 5'- -cUUCAGCAccguuaccGGGAAgGC-CCGAcGCCg -3' miRNA: 3'- cuGAGUCGU--------UCCUUgCGcGGCUuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30286 | 0.67 | 0.614364 |
Target: 5'- uGCUCgaAGCcgccGAGGGcgACGUGUaCGAAGCCg -3' miRNA: 3'- cUGAG--UCG----UUCCU--UGCGCG-GCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 1378 | 0.67 | 0.614364 |
Target: 5'- cGCgUCAGC-GGGAAUGUGCCGcgcaaucacgGGGUCg -3' miRNA: 3'- cUG-AGUCGuUCCUUGCGCGGC----------UUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 17682 | 0.66 | 0.625681 |
Target: 5'- cGGCUCAGCGGGcuugucaGGCGUGgUCG-AGCCg -3' miRNA: 3'- -CUGAGUCGUUCc------UUGCGC-GGCuUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 2559 | 0.66 | 0.625681 |
Target: 5'- aGAgUUAGUcGGGAACGCcucaaCCGGgaAGCCg -3' miRNA: 3'- -CUgAGUCGuUCCUUGCGc----GGCU--UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 22803 | 0.66 | 0.625681 |
Target: 5'- cGACggCAGCGAcGAacACGaCGCCGAcgaauGCCa -3' miRNA: 3'- -CUGa-GUCGUUcCU--UGC-GCGGCUu----CGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 35909 | 0.66 | 0.648321 |
Target: 5'- cGACgUCgGGCAAGGGAaggucgGCGCCcAGGUCg -3' miRNA: 3'- -CUG-AG-UCGUUCCUUg-----CGCGGcUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 38236 | 0.66 | 0.659623 |
Target: 5'- uGCUcCGGCAcgGGGAAgcCGCGCCac-GCCu -3' miRNA: 3'- cUGA-GUCGU--UCCUU--GCGCGGcuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 21571 | 0.66 | 0.670898 |
Target: 5'- -cCUCAGCGcacGGGGugcACGuCGgCGGAGUCg -3' miRNA: 3'- cuGAGUCGU---UCCU---UGC-GCgGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 16340 | 0.66 | 0.670898 |
Target: 5'- cGACUCcGCGA--AGCGCcuGCCGAuuGCCa -3' miRNA: 3'- -CUGAGuCGUUccUUGCG--CGGCUu-CGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 3116 | 0.66 | 0.670898 |
Target: 5'- cGGCUCGcGUAAGGAGauagUGaCGCCGGaauGGCUc -3' miRNA: 3'- -CUGAGU-CGUUCCUU----GC-GCGGCU---UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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