Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 24813 | 0.67 | 0.56936 |
Target: 5'- uGACUCAGgGuguGGcgcuuguCGCGCgGAAGCUu -3' miRNA: 3'- -CUGAGUCgUu--CCuu-----GCGCGgCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 24899 | 0.81 | 0.078009 |
Target: 5'- cGCUgAGCAAGGGGgGCGCCGAcGCUg -3' miRNA: 3'- cUGAgUCGUUCCUUgCGCGGCUuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 27610 | 0.68 | 0.536141 |
Target: 5'- gGAgUCGGCAacccGGGGGaaUGCCGAAGCg -3' miRNA: 3'- -CUgAGUCGU----UCCUUgcGCGGCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 27810 | 0.66 | 0.625681 |
Target: 5'- cACUaugAGUuGGGcgGACGCuucGCCGAAGCCg -3' miRNA: 3'- cUGAg--UCGuUCC--UUGCG---CGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 28914 | 0.68 | 0.525214 |
Target: 5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3' miRNA: 3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 28975 | 0.69 | 0.461671 |
Target: 5'- gGAUUCGGCAAGGucuACgGgGgCGGAGUCg -3' miRNA: 3'- -CUGAGUCGUUCCu--UG-CgCgGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30218 | 0.73 | 0.269949 |
Target: 5'- cGCUguGCGGGaaGAGCGCaacggcaacGCCGggGCCg -3' miRNA: 3'- cUGAguCGUUC--CUUGCG---------CGGCuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30286 | 0.67 | 0.614364 |
Target: 5'- uGCUCgaAGCcgccGAGGGcgACGUGUaCGAAGCCg -3' miRNA: 3'- cUGAG--UCG----UUCCU--UGCGCG-GCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30357 | 1.13 | 0.000395 |
Target: 5'- cGACUCAGCAAGGAACGCGCCGAAGCCg -3' miRNA: 3'- -CUGAGUCGUUCCUUGCGCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30511 | 0.7 | 0.401468 |
Target: 5'- cGugUCGGCAAgGGAAC-CGUCGGcguccgcguucucAGCCg -3' miRNA: 3'- -CugAGUCGUU-CCUUGcGCGGCU-------------UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30691 | 0.66 | 0.670898 |
Target: 5'- cGACUgAGCGccGGuACGUGCuCGAcGCCc -3' miRNA: 3'- -CUGAgUCGUu-CCuUGCGCG-GCUuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 31380 | 0.72 | 0.315083 |
Target: 5'- gGACUCAGCgAAGGAAUGCugaacgguGCUGAucacgucGCCg -3' miRNA: 3'- -CUGAGUCG-UUCCUUGCG--------CGGCUu------CGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 31401 | 0.66 | 0.641532 |
Target: 5'- aGCUCAGCgGAagagcgccgcaacccGGGACGCgaaagcgugcacGCgGAAGCCg -3' miRNA: 3'- cUGAGUCG-UU---------------CCUUGCG------------CGgCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 31450 | 0.7 | 0.402415 |
Target: 5'- cGCUgAGCuaccGGAGCcauGgGCCGAAGCCc -3' miRNA: 3'- cUGAgUCGuu--CCUUG---CgCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32029 | 0.72 | 0.299431 |
Target: 5'- aGGCUgAGC-GGGGGCGCGUCGucGGCUu -3' miRNA: 3'- -CUGAgUCGuUCCUUGCGCGGCu-UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32187 | 0.72 | 0.315083 |
Target: 5'- ---gCGGCAAGcuGACGCGCCuGAGCCg -3' miRNA: 3'- cugaGUCGUUCc-UUGCGCGGcUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32275 | 0.7 | 0.402415 |
Target: 5'- cGACgccCAGCGGacGGAcguucACGCGCCGugccuacuGAGCCg -3' miRNA: 3'- -CUGa--GUCGUU--CCU-----UGCGCGGC--------UUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32959 | 0.69 | 0.461671 |
Target: 5'- -gUUCAGgGAGGAuuaCGCCGAAGCg -3' miRNA: 3'- cuGAGUCgUUCCUugcGCGGCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 34261 | 0.71 | 0.356878 |
Target: 5'- --gUCGGC--GGAGCuuGCCGGAGCCa -3' miRNA: 3'- cugAGUCGuuCCUUGcgCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 35118 | 0.7 | 0.421634 |
Target: 5'- gGACggAGCAAGGAagccACGCGCgGGcAGCa -3' miRNA: 3'- -CUGagUCGUUCCU----UGCGCGgCU-UCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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