Results 61 - 72 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 35554 | 0.66 | 0.670898 |
Target: 5'- cACUCAGCGccGGAUGUcgaGCCGGAGaCg -3' miRNA: 3'- cUGAGUCGUucCUUGCG---CGGCUUCgG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 35909 | 0.66 | 0.648321 |
Target: 5'- cGACgUCgGGCAAGGGAaggucgGCGCCcAGGUCg -3' miRNA: 3'- -CUG-AG-UCGUUCCUUg-----CGCGGcUUCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 36008 | 0.66 | 0.658494 |
Target: 5'- cGACcCGGgcguugugugcgaCAAGGAACuaGCgGAAGCCc -3' miRNA: 3'- -CUGaGUC-------------GUUCCUUGcgCGgCUUCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 36103 | 0.68 | 0.525214 |
Target: 5'- gGGCgc-GCGAGGAa---GCCGAAGCCg -3' miRNA: 3'- -CUGaguCGUUCCUugcgCGGCUUCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 36664 | 0.72 | 0.322325 |
Target: 5'- cGACuUCGGCGAGaAGCaucacaaGCGCCGGAGCg -3' miRNA: 3'- -CUG-AGUCGUUCcUUG-------CGCGGCUUCGg -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 38236 | 0.66 | 0.659623 |
Target: 5'- uGCUcCGGCAcgGGGAAgcCGCGCCac-GCCu -3' miRNA: 3'- cUGA-GUCGU--UCCUU--GCGCGGcuuCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 38513 | 0.68 | 0.525214 |
Target: 5'- cGACcuUCAGCGcgaAGucGAGCGCGaCgGggGCCg -3' miRNA: 3'- -CUG--AGUCGU---UC--CUUGCGC-GgCuuCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 38898 | 0.69 | 0.461671 |
Target: 5'- cGACuUCAGCGAaGAuucuuugugcgACGCGUCG-AGCCg -3' miRNA: 3'- -CUG-AGUCGUUcCU-----------UGCGCGGCuUCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 39435 | 0.7 | 0.441395 |
Target: 5'- ---aCGGCAGGGGGCGCGgCaaGggGCUu -3' miRNA: 3'- cugaGUCGUUCCUUGCGCgG--CuuCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 39769 | 0.72 | 0.307181 |
Target: 5'- cGGCgaacgGGCGAaccuuguugcGGAGCGCGCCGAcGCCc -3' miRNA: 3'- -CUGag---UCGUU----------CCUUGCGCGGCUuCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 39903 | 0.66 | 0.633607 |
Target: 5'- uGACgcuccggCAGCAAGGGcggaagagcgGCuugccgaacuugaaGcCGCCGAAGCCc -3' miRNA: 3'- -CUGa------GUCGUUCCU----------UG--------------C-GCGGCUUCGG- -5' |
|||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 40103 | 0.68 | 0.562671 |
Target: 5'- cGACUacgggcagggGGCAGGGAacgcccaucgagaaGCGCGCuucgaucacgugggCGAAGCCg -3' miRNA: 3'- -CUGAg---------UCGUUCCU--------------UGCGCG--------------GCUUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home