miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 31380 0.72 0.315083
Target:  5'- gGACUCAGCgAAGGAAUGCugaacgguGCUGAucacgucGCCg -3'
miRNA:   3'- -CUGAGUCG-UUCCUUGCG--------CGGCUu------CGG- -5'
8203 5' -54.7 NC_001978.2 + 30691 0.66 0.670898
Target:  5'- cGACUgAGCGccGGuACGUGCuCGAcGCCc -3'
miRNA:   3'- -CUGAgUCGUu-CCuUGCGCG-GCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 30511 0.7 0.401468
Target:  5'- cGugUCGGCAAgGGAAC-CGUCGGcguccgcguucucAGCCg -3'
miRNA:   3'- -CugAGUCGUU-CCUUGcGCGGCU-------------UCGG- -5'
8203 5' -54.7 NC_001978.2 + 30357 1.13 0.000395
Target:  5'- cGACUCAGCAAGGAACGCGCCGAAGCCg -3'
miRNA:   3'- -CUGAGUCGUUCCUUGCGCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 30286 0.67 0.614364
Target:  5'- uGCUCgaAGCcgccGAGGGcgACGUGUaCGAAGCCg -3'
miRNA:   3'- cUGAG--UCG----UUCCU--UGCGCG-GCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 30218 0.73 0.269949
Target:  5'- cGCUguGCGGGaaGAGCGCaacggcaacGCCGggGCCg -3'
miRNA:   3'- cUGAguCGUUC--CUUGCG---------CGGCuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 28975 0.69 0.461671
Target:  5'- gGAUUCGGCAAGGucuACgGgGgCGGAGUCg -3'
miRNA:   3'- -CUGAGUCGUUCCu--UG-CgCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 28914 0.68 0.525214
Target:  5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3'
miRNA:   3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 27810 0.66 0.625681
Target:  5'- cACUaugAGUuGGGcgGACGCuucGCCGAAGCCg -3'
miRNA:   3'- cUGAg--UCGuUCC--UUGCG---CGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 27610 0.68 0.536141
Target:  5'- gGAgUCGGCAacccGGGGGaaUGCCGAAGCg -3'
miRNA:   3'- -CUgAGUCGU----UCCUUgcGCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 24899 0.81 0.078009
Target:  5'- cGCUgAGCAAGGGGgGCGCCGAcGCUg -3'
miRNA:   3'- cUGAgUCGUUCCUUgCGCGGCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 24813 0.67 0.56936
Target:  5'- uGACUCAGgGuguGGcgcuuguCGCGCgGAAGCUu -3'
miRNA:   3'- -CUGAGUCgUu--CCuu-----GCGCGgCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 23657 0.77 0.143597
Target:  5'- cGCgUCGGCAAGGGugGCGCUGugcucGCCa -3'
miRNA:   3'- cUG-AGUCGUUCCUugCGCGGCuu---CGG- -5'
8203 5' -54.7 NC_001978.2 + 23508 0.72 0.307181
Target:  5'- aGGCagCGGCgAAGGAguacgACGCGCCGAAcCCg -3'
miRNA:   3'- -CUGa-GUCG-UUCCU-----UGCGCGGCUUcGG- -5'
8203 5' -54.7 NC_001978.2 + 22803 0.66 0.625681
Target:  5'- cGACggCAGCGAcGAacACGaCGCCGAcgaauGCCa -3'
miRNA:   3'- -CUGa-GUCGUUcCU--UGC-GCGGCUu----CGG- -5'
8203 5' -54.7 NC_001978.2 + 22698 0.67 0.56936
Target:  5'- gGAgUCGGCAacccgcuaccGGGcGCGuCGCUGAGuGCCg -3'
miRNA:   3'- -CUgAGUCGU----------UCCuUGC-GCGGCUU-CGG- -5'
8203 5' -54.7 NC_001978.2 + 21571 0.66 0.670898
Target:  5'- -cCUCAGCGcacGGGGugcACGuCGgCGGAGUCg -3'
miRNA:   3'- cuGAGUCGU---UCCU---UGC-GCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 21437 0.66 0.658494
Target:  5'- gGACUCAGCGAcgccccagacgacGGAAUGCGgCacAGCg -3'
miRNA:   3'- -CUGAGUCGUU-------------CCUUGCGCgGcuUCGg -5'
8203 5' -54.7 NC_001978.2 + 21316 0.67 0.56936
Target:  5'- cGCUCAGguCAAGGucgAACGCGUCGGcGGCa -3'
miRNA:   3'- cUGAGUC--GUUCC---UUGCGCGGCU-UCGg -5'
8203 5' -54.7 NC_001978.2 + 20832 0.67 0.568244
Target:  5'- gGACUCuuuGCGGuccGGAccgucgaACGCGC-GGAGCCa -3'
miRNA:   3'- -CUGAGu--CGUU---CCU-------UGCGCGgCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.