Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 20233 | 0.68 | 0.514373 |
Target: 5'- aGACgguugaGGCcgugAAGGAAgcCGCCGAAGCCg -3' miRNA: 3'- -CUGag----UCG----UUCCUUgcGCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19966 | 0.69 | 0.482427 |
Target: 5'- cGAUUCAGUAuuGGGGACcggcCGCUGAgcagaAGCCg -3' miRNA: 3'- -CUGAGUCGU--UCCUUGc---GCGGCU-----UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19688 | 0.71 | 0.36569 |
Target: 5'- cGCUgGGCAuGGAcUGgGCCGAAGCg -3' miRNA: 3'- cUGAgUCGUuCCUuGCgCGGCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19014 | 0.7 | 0.402415 |
Target: 5'- uGACuaUCAGCAacacGGGAACGC-UCGAAGaCCu -3' miRNA: 3'- -CUG--AGUCGU----UCCUUGCGcGGCUUC-GG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 18896 | 0.73 | 0.265733 |
Target: 5'- cGCUCcgcagcgucgauAGCGGGGAACGCcgcgcgcacccaaaaGCCGggGUCg -3' miRNA: 3'- cUGAG------------UCGUUCCUUGCG---------------CGGCuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 18128 | 0.68 | 0.536141 |
Target: 5'- uGGCcCGGUAAgaccacguGGGACGCGCUGAAGgucCCg -3' miRNA: 3'- -CUGaGUCGUU--------CCUUGCGCGGCUUC---GG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 17891 | 0.72 | 0.299431 |
Target: 5'- -uCUCGGCAAGcuucccgcGAAgGCgaaGCCGAAGCCg -3' miRNA: 3'- cuGAGUCGUUC--------CUUgCG---CGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 17838 | 0.71 | 0.374652 |
Target: 5'- uACUcCGGCAAGGAcgcugacgGCGUGCCGGgcgaagGGUCg -3' miRNA: 3'- cUGA-GUCGUUCCU--------UGCGCGGCU------UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 17827 | 0.71 | 0.36569 |
Target: 5'- aAUUCGGCcccGGAccguccuuguacGCGuCGCCGAAGCCc -3' miRNA: 3'- cUGAGUCGuu-CCU------------UGC-GCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 17682 | 0.66 | 0.625681 |
Target: 5'- cGGCUCAGCGGGcuugucaGGCGUGgUCG-AGCCg -3' miRNA: 3'- -CUGAGUCGUUCc------UUGCGC-GGCuUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 16660 | 0.66 | 0.625681 |
Target: 5'- aGGCUgGGC-AGGAaaccgGCGCGCUu--GCCg -3' miRNA: 3'- -CUGAgUCGuUCCU-----UGCGCGGcuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 16340 | 0.66 | 0.670898 |
Target: 5'- cGACUCcGCGA--AGCGCcuGCCGAuuGCCa -3' miRNA: 3'- -CUGAGuCGUUccUUGCG--CGGCUu-CGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 14487 | 0.67 | 0.614364 |
Target: 5'- -cUUCAGCAccguuaccGGGAAgGC-CCGAcGCCg -3' miRNA: 3'- cuGAGUCGU--------UCCUUgCGcGGCUuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 13790 | 0.74 | 0.242849 |
Target: 5'- --aUCAGUAAGGcauACGCcauagcgacgGCCGGAGCCg -3' miRNA: 3'- cugAGUCGUUCCu--UGCG----------CGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 13639 | 0.66 | 0.670898 |
Target: 5'- cGACUCAGCGGcaauGGcgacuCGCGCCuaugcggucGgcGCCg -3' miRNA: 3'- -CUGAGUCGUU----CCuu---GCGCGG---------CuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 13437 | 0.76 | 0.179871 |
Target: 5'- gGACUCAGUAcgaauugaAGGu-UGuCGCCGAAGCCa -3' miRNA: 3'- -CUGAGUCGU--------UCCuuGC-GCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 12215 | 0.73 | 0.277093 |
Target: 5'- ---cCAGCcgugcccccgauAAGGAcCGUGCCGGAGCCg -3' miRNA: 3'- cugaGUCG------------UUCCUuGCGCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 12078 | 0.71 | 0.383761 |
Target: 5'- --gUCGGCAAGcugaGACGCGCCauAGCCg -3' miRNA: 3'- cugAGUCGUUCc---UUGCGCGGcuUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 11644 | 0.66 | 0.637003 |
Target: 5'- ----gGGCAGGGAcCgGCGCCGGacgacccgguaAGCCg -3' miRNA: 3'- cugagUCGUUCCUuG-CGCGGCU-----------UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 9810 | 0.76 | 0.184938 |
Target: 5'- cGCUgGGCAAGGucgacGGCGCGgCGAAGUCg -3' miRNA: 3'- cUGAgUCGUUCC-----UUGCGCgGCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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