miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 35909 0.66 0.648321
Target:  5'- cGACgUCgGGCAAGGGAaggucgGCGCCcAGGUCg -3'
miRNA:   3'- -CUG-AG-UCGUUCCUUg-----CGCGGcUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 32187 0.72 0.315083
Target:  5'- ---gCGGCAAGcuGACGCGCCuGAGCCg -3'
miRNA:   3'- cugaGUCGUUCc-UUGCGCGGcUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 30511 0.7 0.401468
Target:  5'- cGugUCGGCAAgGGAAC-CGUCGGcguccgcguucucAGCCg -3'
miRNA:   3'- -CugAGUCGUU-CCUUGcGCGGCU-------------UCGG- -5'
8203 5' -54.7 NC_001978.2 + 38236 0.66 0.659623
Target:  5'- uGCUcCGGCAcgGGGAAgcCGCGCCac-GCCu -3'
miRNA:   3'- cUGA-GUCGU--UCCUU--GCGCGGcuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 18896 0.73 0.265733
Target:  5'- cGCUCcgcagcgucgauAGCGGGGAACGCcgcgcgcacccaaaaGCCGggGUCg -3'
miRNA:   3'- cUGAG------------UCGUUCCUUGCG---------------CGGCuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 2623 0.66 0.669772
Target:  5'- uGGCUCAGuCGAccgucacGGcACGCGUCGuacacGGCCu -3'
miRNA:   3'- -CUGAGUC-GUU-------CCuUGCGCGGCu----UCGG- -5'
8203 5' -54.7 NC_001978.2 + 21571 0.66 0.670898
Target:  5'- -cCUCAGCGcacGGGGugcACGuCGgCGGAGUCg -3'
miRNA:   3'- cuGAGUCGU---UCCU---UGC-GCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 8227 0.73 0.262953
Target:  5'- aGGCUCAGCGGcucGCGUGCCGuauGCCg -3'
miRNA:   3'- -CUGAGUCGUUccuUGCGCGGCuu-CGG- -5'
8203 5' -54.7 NC_001978.2 + 40103 0.68 0.562671
Target:  5'- cGACUacgggcagggGGCAGGGAacgcccaucgagaaGCGCGCuucgaucacgugggCGAAGCCg -3'
miRNA:   3'- -CUGAg---------UCGUUCCU--------------UGCGCG--------------GCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 18128 0.68 0.536141
Target:  5'- uGGCcCGGUAAgaccacguGGGACGCGCUGAAGgucCCg -3'
miRNA:   3'- -CUGaGUCGUU--------CCUUGCGCGGCUUC---GG- -5'
8203 5' -54.7 NC_001978.2 + 19688 0.71 0.36569
Target:  5'- cGCUgGGCAuGGAcUGgGCCGAAGCg -3'
miRNA:   3'- cUGAgUCGUuCCUuGCgCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 260 0.71 0.36569
Target:  5'- cGAC-CGGCAAGGAcguauggcggaACGUGUgGcAAGCCg -3'
miRNA:   3'- -CUGaGUCGUUCCU-----------UGCGCGgC-UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 34261 0.71 0.356878
Target:  5'- --gUCGGC--GGAGCuuGCCGGAGCCa -3'
miRNA:   3'- cugAGUCGuuCCUUGcgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 39769 0.72 0.307181
Target:  5'- cGGCgaacgGGCGAaccuuguugcGGAGCGCGCCGAcGCCc -3'
miRNA:   3'- -CUGag---UCGUU----------CCUUGCGCGGCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 13790 0.74 0.242849
Target:  5'- --aUCAGUAAGGcauACGCcauagcgacgGCCGGAGCCg -3'
miRNA:   3'- cugAGUCGUUCCu--UGCG----------CGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 9093 0.68 0.503623
Target:  5'- cGACUcCGGCuGAGGcuaaGCGCCuggguGAAGCCg -3'
miRNA:   3'- -CUGA-GUCG-UUCCuug-CGCGG-----CUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 20233 0.68 0.514373
Target:  5'- aGACgguugaGGCcgugAAGGAAgcCGCCGAAGCCg -3'
miRNA:   3'- -CUGag----UCG----UUCCUUgcGCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 28914 0.68 0.525214
Target:  5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3'
miRNA:   3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 36103 0.68 0.525214
Target:  5'- gGGCgc-GCGAGGAa---GCCGAAGCCg -3'
miRNA:   3'- -CUGaguCGUUCCUugcgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 38513 0.68 0.525214
Target:  5'- cGACcuUCAGCGcgaAGucGAGCGCGaCgGggGCCg -3'
miRNA:   3'- -CUG--AGUCGU---UC--CUUGCGC-GgCuuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.