miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 30286 0.67 0.614364
Target:  5'- uGCUCgaAGCcgccGAGGGcgACGUGUaCGAAGCCg -3'
miRNA:   3'- cUGAG--UCG----UUCCU--UGCGCG-GCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 14487 0.67 0.614364
Target:  5'- -cUUCAGCAccguuaccGGGAAgGC-CCGAcGCCg -3'
miRNA:   3'- cuGAGUCGU--------UCCUUgCGcGGCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 40103 0.68 0.562671
Target:  5'- cGACUacgggcagggGGCAGGGAacgcccaucgagaaGCGCGCuucgaucacgugggCGAAGCCg -3'
miRNA:   3'- -CUGAg---------UCGUUCCU--------------UGCGCG--------------GCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 18128 0.68 0.536141
Target:  5'- uGGCcCGGUAAgaccacguGGGACGCGCUGAAGgucCCg -3'
miRNA:   3'- -CUGaGUCGUU--------CCUUGCGCGGCUUC---GG- -5'
8203 5' -54.7 NC_001978.2 + 36103 0.68 0.525214
Target:  5'- gGGCgc-GCGAGGAa---GCCGAAGCCg -3'
miRNA:   3'- -CUGaguCGUUCCUugcgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 28914 0.68 0.525214
Target:  5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3'
miRNA:   3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 20233 0.68 0.514373
Target:  5'- aGACgguugaGGCcgugAAGGAAgcCGCCGAAGCCg -3'
miRNA:   3'- -CUGag----UCG----UUCCUUgcGCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 9093 0.68 0.503623
Target:  5'- cGACUcCGGCuGAGGcuaaGCGCCuggguGAAGCCg -3'
miRNA:   3'- -CUGA-GUCG-UUCCuug-CGCGG-----CUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 19966 0.69 0.482427
Target:  5'- cGAUUCAGUAuuGGGGACcggcCGCUGAgcagaAGCCg -3'
miRNA:   3'- -CUGAGUCGU--UCCUUGc---GCGGCU-----UCGG- -5'
8203 5' -54.7 NC_001978.2 + 28975 0.69 0.461671
Target:  5'- gGAUUCGGCAAGGucuACgGgGgCGGAGUCg -3'
miRNA:   3'- -CUGAGUCGUUCCu--UG-CgCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 32959 0.69 0.461671
Target:  5'- -gUUCAGgGAGGAuuaCGCCGAAGCg -3'
miRNA:   3'- cuGAGUCgUUCCUugcGCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 30357 1.13 0.000395
Target:  5'- cGACUCAGCAAGGAACGCGCCGAAGCCg -3'
miRNA:   3'- -CUGAGUCGUUCCUUGCGCGGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.