Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 30286 | 0.67 | 0.614364 |
Target: 5'- uGCUCgaAGCcgccGAGGGcgACGUGUaCGAAGCCg -3' miRNA: 3'- cUGAG--UCG----UUCCU--UGCGCG-GCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 14487 | 0.67 | 0.614364 |
Target: 5'- -cUUCAGCAccguuaccGGGAAgGC-CCGAcGCCg -3' miRNA: 3'- cuGAGUCGU--------UCCUUgCGcGGCUuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 1378 | 0.67 | 0.614364 |
Target: 5'- cGCgUCAGC-GGGAAUGUGCCGcgcaaucacgGGGUCg -3' miRNA: 3'- cUG-AGUCGuUCCUUGCGCGGC----------UUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 22698 | 0.67 | 0.56936 |
Target: 5'- gGAgUCGGCAacccgcuaccGGGcGCGuCGCUGAGuGCCg -3' miRNA: 3'- -CUgAGUCGU----------UCCuUGC-GCGGCUU-CGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 21316 | 0.67 | 0.56936 |
Target: 5'- cGCUCAGguCAAGGucgAACGCGUCGGcGGCa -3' miRNA: 3'- cUGAGUC--GUUCC---UUGCGCGGCU-UCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 24813 | 0.67 | 0.56936 |
Target: 5'- uGACUCAGgGuguGGcgcuuguCGCGCgGAAGCUu -3' miRNA: 3'- -CUGAGUCgUu--CCuu-----GCGCGgCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 20832 | 0.67 | 0.568244 |
Target: 5'- gGACUCuuuGCGGuccGGAccgucgaACGCGC-GGAGCCa -3' miRNA: 3'- -CUGAGu--CGUU---CCU-------UGCGCGgCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 40103 | 0.68 | 0.562671 |
Target: 5'- cGACUacgggcagggGGCAGGGAacgcccaucgagaaGCGCGCuucgaucacgugggCGAAGCCg -3' miRNA: 3'- -CUGAg---------UCGUUCCU--------------UGCGCG--------------GCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 4916 | 0.68 | 0.551569 |
Target: 5'- uACUUAGaaagcgcgcgaacaAGGGAACGCGCgucgaaaugaGAAGCCg -3' miRNA: 3'- cUGAGUCg-------------UUCCUUGCGCGg---------CUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 18128 | 0.68 | 0.536141 |
Target: 5'- uGGCcCGGUAAgaccacguGGGACGCGCUGAAGgucCCg -3' miRNA: 3'- -CUGaGUCGUU--------CCUUGCGCGGCUUC---GG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 27610 | 0.68 | 0.536141 |
Target: 5'- gGAgUCGGCAacccGGGGGaaUGCCGAAGCg -3' miRNA: 3'- -CUgAGUCGU----UCCUUgcGCGGCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 28914 | 0.68 | 0.525214 |
Target: 5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3' miRNA: 3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 38513 | 0.68 | 0.525214 |
Target: 5'- cGACcuUCAGCGcgaAGucGAGCGCGaCgGggGCCg -3' miRNA: 3'- -CUG--AGUCGU---UC--CUUGCGC-GgCuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 36103 | 0.68 | 0.525214 |
Target: 5'- gGGCgc-GCGAGGAa---GCCGAAGCCg -3' miRNA: 3'- -CUGaguCGUUCCUugcgCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 20233 | 0.68 | 0.514373 |
Target: 5'- aGACgguugaGGCcgugAAGGAAgcCGCCGAAGCCg -3' miRNA: 3'- -CUGag----UCG----UUCCUUgcGCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 9093 | 0.68 | 0.503623 |
Target: 5'- cGACUcCGGCuGAGGcuaaGCGCCuggguGAAGCCg -3' miRNA: 3'- -CUGA-GUCG-UUCCuug-CGCGG-----CUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19966 | 0.69 | 0.482427 |
Target: 5'- cGAUUCAGUAuuGGGGACcggcCGCUGAgcagaAGCCg -3' miRNA: 3'- -CUGAGUCGU--UCCUUGc---GCGGCU-----UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 28975 | 0.69 | 0.461671 |
Target: 5'- gGAUUCGGCAAGGucuACgGgGgCGGAGUCg -3' miRNA: 3'- -CUGAGUCGUUCCu--UG-CgCgGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 38898 | 0.69 | 0.461671 |
Target: 5'- cGACuUCAGCGAaGAuucuuugugcgACGCGUCG-AGCCg -3' miRNA: 3'- -CUG-AGUCGUUcCU-----------UGCGCGGCuUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32959 | 0.69 | 0.461671 |
Target: 5'- -gUUCAGgGAGGAuuaCGCCGAAGCg -3' miRNA: 3'- cuGAGUCgUUCCUugcGCGGCUUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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