miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8204	5'	-56.6	NC_001978.2	+	25467	0.66	0.604384
	Target:  5'- --cCGGUCGGcGGCGUAgUCggCGGc- -3' miRNA:   3'- ccaGCCAGCC-CCGCGUgAGuaGCUuc -5'
8204	5'	-56.6	NC_001978.2	+	37814	0.66	0.601094
	Target:  5'- gGGUCGccgucGUCGGGcagcGCGCaauagcccuucaugGCUCcGUCGAAGa -3' miRNA:   3'- -CCAGC-----CAGCCC----CGCG--------------UGAG-UAGCUUC- -5'
8204	5'	-56.6	NC_001978.2	+	21583	0.66	0.590147
	Target:  5'- cGUCGcGUacagccucagcgcaCGGGGUGCACgUCggCGGAGu -3' miRNA:   3'- cCAGC-CA--------------GCCCCGCGUG-AGuaGCUUC- -5'
8204	5'	-56.6	NC_001978.2	+	40022	0.66	0.571624
	Target:  5'- aGUCguGGUgGGGGCGCGCgUCAguagaCGAc- -3' miRNA:   3'- cCAG--CCAgCCCCGCGUG-AGUa----GCUuc -5'
8204	5'	-56.6	NC_001978.2	+	40060	0.66	0.571624
	Target:  5'- gGGcCGGUCGGGucaGCGUcgGCgUCuUCGggGa -3' miRNA:   3'- -CCaGCCAGCCC---CGCG--UG-AGuAGCuuC- -5'
8204	5'	-56.6	NC_001978.2	+	40218	0.68	0.456728
	Target:  5'- cGUCGGUCGGcGGCuucgccCACgUgAUCGAAGc -3' miRNA:   3'- cCAGCCAGCC-CCGc-----GUG-AgUAGCUUC- -5'
8204	5'	-56.6	NC_001978.2	+	22585	0.7	0.363939
	Target:  5'- cGGUCGcacggaaggcGUCGGGGCGCauggugaccggcACUCAgCGAc- -3' miRNA:   3'- -CCAGC----------CAGCCCCGCG------------UGAGUaGCUuc -5'
8204	5'	-56.6	NC_001978.2	+	34249	0.71	0.338763
	Target:  5'- aGUCGGagUUGGGcGCGCACUCGaCGGc- -3' miRNA:   3'- cCAGCC--AGCCC-CGCGUGAGUaGCUuc -5'
8204	5'	-56.6	NC_001978.2	+	18543	0.72	0.257481
	Target:  5'- -aUCGGUCuuaucGGGCGCGCUCAgUCGGGc -3' miRNA:   3'- ccAGCCAGc----CCCGCGUGAGU-AGCUUc -5'
8204	5'	-56.6	NC_001978.2	+	30514	1.1	0.000526
	Target:  5'- aGGUCGGUCGGGGCGCACUCAUCGAAGc -3' miRNA:   3'- -CCAGCCAGCCCCGCGUGAGUAGCUUC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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