miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 8602 0.67 0.515715
Target:  5'- gGCGCgaAGCAucgggGCaCGGCGCGaaCCGGCCu -3'
miRNA:   3'- -CGUG--UCGU-----UGaGCUGCGUggGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 4525 0.67 0.515715
Target:  5'- uCGCAGCGuGC-CGGaagacgUGCGCCCCAGUa -3'
miRNA:   3'- cGUGUCGU-UGaGCU------GCGUGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 25417 0.67 0.515715
Target:  5'- cGCcgacCGGUucgGGCUCGACGuCGCCCaGGCUg -3'
miRNA:   3'- -CGu---GUCG---UUGAGCUGC-GUGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 33181 0.67 0.515715
Target:  5'- cGguCGGguGCUCGAC-CACCuUCAcGCCg -3'
miRNA:   3'- -CguGUCguUGAGCUGcGUGG-GGU-CGG- -5'
8205 5' -56.4 NC_001978.2 + 34481 0.67 0.505128
Target:  5'- cGCuuCGGCcguGAUUCGcCGCGCCCC-GCUu -3'
miRNA:   3'- -CGu-GUCG---UUGAGCuGCGUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 39839 0.67 0.505128
Target:  5'- cGCGCGGCAggcGCguaCGACGgACCCguuGGCa -3'
miRNA:   3'- -CGUGUCGU---UGa--GCUGCgUGGGg--UCGg -5'
8205 5' -56.4 NC_001978.2 + 30653 0.67 0.494635
Target:  5'- -uGCGGCGcuugaagacguGCU-GACGguCCCCAGCg -3'
miRNA:   3'- cgUGUCGU-----------UGAgCUGCguGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 12083 0.67 0.494635
Target:  5'- uGCcaguCGGCaAGCUgaGACGCGCCaUAGCCg -3'
miRNA:   3'- -CGu---GUCG-UUGAg-CUGCGUGGgGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 22167 0.67 0.494635
Target:  5'- cGCACA-CGGC-CGACGUacucACCCCGGaUCa -3'
miRNA:   3'- -CGUGUcGUUGaGCUGCG----UGGGGUC-GG- -5'
8205 5' -56.4 NC_001978.2 + 31534 0.67 0.494635
Target:  5'- aCACGGCA---CGGCGCuugACUCCGGCUu -3'
miRNA:   3'- cGUGUCGUugaGCUGCG---UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 10618 0.67 0.494635
Target:  5'- cGCAuccuguCGGCAGCgUCGuCGUugCUCAGCg -3'
miRNA:   3'- -CGU------GUCGUUG-AGCuGCGugGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 22255 0.67 0.494635
Target:  5'- uGCGC-GUAugGCUCGACGCcgacggcaACCCgAcGCCg -3'
miRNA:   3'- -CGUGuCGU--UGAGCUGCG--------UGGGgU-CGG- -5'
8205 5' -56.4 NC_001978.2 + 32350 0.67 0.488388
Target:  5'- gGCACGGCGcgugaacguccguccGCUgGGCGUcgugaCCCGGUCg -3'
miRNA:   3'- -CGUGUCGU---------------UGAgCUGCGug---GGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 28396 0.67 0.484243
Target:  5'- cGCGCAGCaugcggcgaaggGugUCGACGUACUCaagaucaAGCg -3'
miRNA:   3'- -CGUGUCG------------UugAGCUGCGUGGGg------UCGg -5'
8205 5' -56.4 NC_001978.2 + 22882 0.67 0.484243
Target:  5'- aGCGCGGgGACggCGGCGUuguGgCCguGCCa -3'
miRNA:   3'- -CGUGUCgUUGa-GCUGCG---UgGGguCGG- -5'
8205 5' -56.4 NC_001978.2 + 9826 0.67 0.484243
Target:  5'- aGCuuCAGCAACgCGucuUGCAuguCCUCAGCCu -3'
miRNA:   3'- -CGu-GUCGUUGaGCu--GCGU---GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 14287 0.67 0.484243
Target:  5'- gGCGCAGCGAagcCGAagUGCGCCUagCGGCUu -3'
miRNA:   3'- -CGUGUCGUUga-GCU--GCGUGGG--GUCGG- -5'
8205 5' -56.4 NC_001978.2 + 4797 0.67 0.484243
Target:  5'- cGCGauuccCAGCcgGACggCGACGuUGCCCCGGCUu -3'
miRNA:   3'- -CGU-----GUCG--UUGa-GCUGC-GUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 10784 0.67 0.48321
Target:  5'- cCACAGCGgaagcaaGCgaCGACGCAaagccgCCCAGCUu -3'
miRNA:   3'- cGUGUCGU-------UGa-GCUGCGUg-----GGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 30916 0.68 0.473957
Target:  5'- gGCACGGUGACgggugCGACaugaaggcauguGCGCCCaGGUCg -3'
miRNA:   3'- -CGUGUCGUUGa----GCUG------------CGUGGGgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.