Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8206 | 3' | -57.4 | NC_001978.2 | + | 38539 | 0.66 | 0.530219 |
Target: 5'- cGUUgGCGCuacGCUGUGUC-GCUGGGCUu -3' miRNA: 3'- -CAAgUGCG---CGGCACGGaUGACUCGGc -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 40104 | 0.66 | 0.530219 |
Target: 5'- --aCACGCGCuUGUcGUCUACUGAcGCgCGc -3' miRNA: 3'- caaGUGCGCG-GCA-CGGAUGACU-CG-GC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 12228 | 0.66 | 0.50576 |
Target: 5'- --cCACGUgccgcccccaGCCGUGCCcccgauaaggaccgUGCcgGAGCCGa -3' miRNA: 3'- caaGUGCG----------CGGCACGG--------------AUGa-CUCGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 17617 | 0.66 | 0.487997 |
Target: 5'- --cCACGC-CUGacaaGCCcGCUGAGCCGu -3' miRNA: 3'- caaGUGCGcGGCa---CGGaUGACUCGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 26183 | 0.67 | 0.418258 |
Target: 5'- -cUCACGCGCuUGUGgCauggACUGAcgGCCGg -3' miRNA: 3'- caAGUGCGCG-GCACgGa---UGACU--CGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 17161 | 0.68 | 0.408795 |
Target: 5'- aUUCGCcUGCCGUGCCgggGCuUGAGUgGu -3' miRNA: 3'- cAAGUGcGCGGCACGGa--UG-ACUCGgC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 34064 | 0.68 | 0.390277 |
Target: 5'- --gUugGCGCCGU-CCUugUGAacGCCa -3' miRNA: 3'- caaGugCGCGGCAcGGAugACU--CGGc -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 9885 | 0.68 | 0.372316 |
Target: 5'- cGUUCACGCGCgGU-CUUcagACUGGGuuGg -3' miRNA: 3'- -CAAGUGCGCGgCAcGGA---UGACUCggC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 28994 | 0.71 | 0.272524 |
Target: 5'- -gUCGCGCuUCGUcGCCUcaagccccuugaugaGCUGAGCCGu -3' miRNA: 3'- caAGUGCGcGGCA-CGGA---------------UGACUCGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 41194 | 0.72 | 0.209549 |
Target: 5'- cUUCACacuGCGCUGUGCCUgauagguggcgugguGCUGAGCa- -3' miRNA: 3'- cAAGUG---CGCGGCACGGA---------------UGACUCGgc -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 2519 | 0.72 | 0.207312 |
Target: 5'- -cUCGCGCGCaugGUGCCUGCcacucaGGCCGu -3' miRNA: 3'- caAGUGCGCGg--CACGGAUGac----UCGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 34251 | 0.74 | 0.148827 |
Target: 5'- -gUCAUGCGCCGUcggcggaGCUUGCcgGAGCCa -3' miRNA: 3'- caAGUGCGCGGCA-------CGGAUGa-CUCGGc -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 2556 | 0.75 | 0.141135 |
Target: 5'- --aCGCGUGCCGUGaCggucgACUGAGCCa -3' miRNA: 3'- caaGUGCGCGGCACgGa----UGACUCGGc -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 19867 | 0.77 | 0.103355 |
Target: 5'- --aUugGCGCCGUGCCgg--GGGCCGa -3' miRNA: 3'- caaGugCGCGGCACGGaugaCUCGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 19682 | 0.77 | 0.100437 |
Target: 5'- -cUCGCGCGCUGgGCauggACUGGGCCGa -3' miRNA: 3'- caAGUGCGCGGCaCGga--UGACUCGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 27838 | 0.8 | 0.057849 |
Target: 5'- cUUCAUGCGCCGUGCCgaACUGAaCCGu -3' miRNA: 3'- cAAGUGCGCGGCACGGa-UGACUcGGC- -5' |
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8206 | 3' | -57.4 | NC_001978.2 | + | 32293 | 1.09 | 0.000394 |
Target: 5'- cGUUCACGCGCCGUGCCUACUGAGCCGa -3' miRNA: 3'- -CAAGUGCGCGGCACGGAUGACUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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