Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8207 | 3' | -53.6 | NC_001978.2 | + | 30651 | 0.66 | 0.71923 |
Target: 5'- cGCAUCGagcacGCACgUacGGGCUUCGGCGUc- -3' miRNA: 3'- -UGUGGC-----UGUGgA--CUCGAAGUCGCAac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 27120 | 0.66 | 0.685554 |
Target: 5'- gGCAUUGugGCCUGGGCggugcgCGGUGc-- -3' miRNA: 3'- -UGUGGCugUGGACUCGaa----GUCGCaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 6216 | 0.66 | 0.674201 |
Target: 5'- --uCCGACGCaaucGA-CUUCAGCGUUGa -3' miRNA: 3'- uguGGCUGUGga--CUcGAAGUCGCAAC- -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 26251 | 0.67 | 0.651379 |
Target: 5'- gACGgCGugACCUGGGUgaagUCGGCa--- -3' miRNA: 3'- -UGUgGCugUGGACUCGa---AGUCGcaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 862 | 0.67 | 0.628479 |
Target: 5'- uGCuCCGGCGCCUGGGCgc--GCGa-- -3' miRNA: 3'- -UGuGGCUGUGGACUCGaaguCGCaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 38318 | 0.67 | 0.615884 |
Target: 5'- cCGCUGAggguugcCGCCgGGGCUUCGGUGUg- -3' miRNA: 3'- uGUGGCU-------GUGGaCUCGAAGUCGCAac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 24913 | 0.67 | 0.612452 |
Target: 5'- gGCGCCGACGCUgcgcacaacauGCUUcCGGCGUg- -3' miRNA: 3'- -UGUGGCUGUGGacu--------CGAA-GUCGCAac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 4094 | 0.68 | 0.594181 |
Target: 5'- cCGCUGA-ACCUGGGCgaagUCGGCGa-- -3' miRNA: 3'- uGUGGCUgUGGACUCGa---AGUCGCaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 18906 | 0.68 | 0.594181 |
Target: 5'- cGCGCucuuCGugACCgGGGCUUCAGCa--- -3' miRNA: 3'- -UGUG----GCugUGGaCUCGAAGUCGcaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 611 | 0.7 | 0.441893 |
Target: 5'- -gACCGGCggcaACCUuccGGGCUUCAGCGg-- -3' miRNA: 3'- ugUGGCUG----UGGA---CUCGAAGUCGCaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 33042 | 0.73 | 0.306208 |
Target: 5'- aGCGUCGuACGCCUGAagcGCUUCGGCGUa- -3' miRNA: 3'- -UGUGGC-UGUGGACU---CGAAGUCGCAac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 31308 | 0.73 | 0.298389 |
Target: 5'- gGCGCCGACGCgCUGAGUggugaCGGUGUg- -3' miRNA: 3'- -UGUGGCUGUG-GACUCGaa---GUCGCAac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 36091 | 0.74 | 0.283216 |
Target: 5'- cCGCCGACACCUGGGCgc--GCGa-- -3' miRNA: 3'- uGUGGCUGUGGACUCGaaguCGCaac -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 3085 | 0.74 | 0.283216 |
Target: 5'- -uGCCGACACCUGAaGCgcgUCAuGCGgagUGa -3' miRNA: 3'- ugUGGCUGUGGACU-CGa--AGU-CGCa--AC- -5' |
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8207 | 3' | -53.6 | NC_001978.2 | + | 32854 | 1.08 | 0.001116 |
Target: 5'- gACACCGACACCUGAGCUUCAGCGUUGu -3' miRNA: 3'- -UGUGGCUGUGGACUCGAAGUCGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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