miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8207 3' -53.6 NC_001978.2 + 30651 0.66 0.71923
Target:  5'- cGCAUCGagcacGCACgUacGGGCUUCGGCGUc- -3'
miRNA:   3'- -UGUGGC-----UGUGgA--CUCGAAGUCGCAac -5'
8207 3' -53.6 NC_001978.2 + 27120 0.66 0.685554
Target:  5'- gGCAUUGugGCCUGGGCggugcgCGGUGc-- -3'
miRNA:   3'- -UGUGGCugUGGACUCGaa----GUCGCaac -5'
8207 3' -53.6 NC_001978.2 + 6216 0.66 0.674201
Target:  5'- --uCCGACGCaaucGA-CUUCAGCGUUGa -3'
miRNA:   3'- uguGGCUGUGga--CUcGAAGUCGCAAC- -5'
8207 3' -53.6 NC_001978.2 + 26251 0.67 0.651379
Target:  5'- gACGgCGugACCUGGGUgaagUCGGCa--- -3'
miRNA:   3'- -UGUgGCugUGGACUCGa---AGUCGcaac -5'
8207 3' -53.6 NC_001978.2 + 862 0.67 0.628479
Target:  5'- uGCuCCGGCGCCUGGGCgc--GCGa-- -3'
miRNA:   3'- -UGuGGCUGUGGACUCGaaguCGCaac -5'
8207 3' -53.6 NC_001978.2 + 38318 0.67 0.615884
Target:  5'- cCGCUGAggguugcCGCCgGGGCUUCGGUGUg- -3'
miRNA:   3'- uGUGGCU-------GUGGaCUCGAAGUCGCAac -5'
8207 3' -53.6 NC_001978.2 + 24913 0.67 0.612452
Target:  5'- gGCGCCGACGCUgcgcacaacauGCUUcCGGCGUg- -3'
miRNA:   3'- -UGUGGCUGUGGacu--------CGAA-GUCGCAac -5'
8207 3' -53.6 NC_001978.2 + 18906 0.68 0.594181
Target:  5'- cGCGCucuuCGugACCgGGGCUUCAGCa--- -3'
miRNA:   3'- -UGUG----GCugUGGaCUCGAAGUCGcaac -5'
8207 3' -53.6 NC_001978.2 + 4094 0.68 0.594181
Target:  5'- cCGCUGA-ACCUGGGCgaagUCGGCGa-- -3'
miRNA:   3'- uGUGGCUgUGGACUCGa---AGUCGCaac -5'
8207 3' -53.6 NC_001978.2 + 611 0.7 0.441893
Target:  5'- -gACCGGCggcaACCUuccGGGCUUCAGCGg-- -3'
miRNA:   3'- ugUGGCUG----UGGA---CUCGAAGUCGCaac -5'
8207 3' -53.6 NC_001978.2 + 33042 0.73 0.306208
Target:  5'- aGCGUCGuACGCCUGAagcGCUUCGGCGUa- -3'
miRNA:   3'- -UGUGGC-UGUGGACU---CGAAGUCGCAac -5'
8207 3' -53.6 NC_001978.2 + 31308 0.73 0.298389
Target:  5'- gGCGCCGACGCgCUGAGUggugaCGGUGUg- -3'
miRNA:   3'- -UGUGGCUGUG-GACUCGaa---GUCGCAac -5'
8207 3' -53.6 NC_001978.2 + 3085 0.74 0.283216
Target:  5'- -uGCCGACACCUGAaGCgcgUCAuGCGgagUGa -3'
miRNA:   3'- ugUGGCUGUGGACU-CGa--AGU-CGCa--AC- -5'
8207 3' -53.6 NC_001978.2 + 36091 0.74 0.283216
Target:  5'- cCGCCGACACCUGGGCgc--GCGa-- -3'
miRNA:   3'- uGUGGCUGUGGACUCGaaguCGCaac -5'
8207 3' -53.6 NC_001978.2 + 32854 1.08 0.001116
Target:  5'- gACACCGACACCUGAGCUUCAGCGUUGu -3'
miRNA:   3'- -UGUGGCUGUGGACUCGAAGUCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.