Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 32888 | 1.09 | 0.000729 |
Target: 5'- gCGCUACGUCGACCACGCCGACACUGAg -3' miRNA: 3'- -GCGAUGCAGCUGGUGCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 12390 | 0.77 | 0.140596 |
Target: 5'- uGCcgaagGCGUCGACCACGUUcACGCUGAc -3' miRNA: 3'- gCGa----UGCAGCUGGUGCGGcUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 28044 | 0.75 | 0.206333 |
Target: 5'- -uCUACGUCGACC-CGUCGGCGCcgGAc -3' miRNA: 3'- gcGAUGCAGCUGGuGCGGCUGUGa-CU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 41278 | 0.74 | 0.241883 |
Target: 5'- aGCUcgACGUCGACCACaucaaGCCGcuuGCAUUGGg -3' miRNA: 3'- gCGA--UGCAGCUGGUG-----CGGC---UGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 9006 | 0.72 | 0.297043 |
Target: 5'- gCGCUAucgcCGUCGGCauugGCGCCGGuauCGCUGAg -3' miRNA: 3'- -GCGAU----GCAGCUGg---UGCGGCU---GUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 33134 | 0.72 | 0.304586 |
Target: 5'- gGCaaGCGUUGGCaCGuugcCGCCGACGCUGAg -3' miRNA: 3'- gCGa-UGCAGCUG-GU----GCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 19356 | 0.72 | 0.320112 |
Target: 5'- gCGCUACGUccCGACgGaCGCCGACG-UGAc -3' miRNA: 3'- -GCGAUGCA--GCUGgU-GCGGCUGUgACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 17602 | 0.72 | 0.328094 |
Target: 5'- aCGUUgGCGgcUCGACCACGCCuGACaagcccGCUGAg -3' miRNA: 3'- -GCGA-UGC--AGCUGGUGCGG-CUG------UGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 25431 | 0.71 | 0.379042 |
Target: 5'- gGCUcgACGUCGcCCAgGCUgaGGCGCUGGg -3' miRNA: 3'- gCGA--UGCAGCuGGUgCGG--CUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 13568 | 0.7 | 0.406431 |
Target: 5'- aCGCccgguucgGCGUCGACUccguucGCGCUGACGCaUGGu -3' miRNA: 3'- -GCGa-------UGCAGCUGG------UGCGGCUGUG-ACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 6804 | 0.7 | 0.415833 |
Target: 5'- gCGCUcaGCGUCGACCggauugcccgGCGUCGugACa-- -3' miRNA: 3'- -GCGA--UGCAGCUGG----------UGCGGCugUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 31018 | 0.7 | 0.415833 |
Target: 5'- gCGCUAUGUCGcuGCCGugaaGCUGACcgguGCUGAg -3' miRNA: 3'- -GCGAUGCAGC--UGGUg---CGGCUG----UGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 26528 | 0.69 | 0.43503 |
Target: 5'- cCGUacgAgGUCGACCACGCCGuuCGCg-- -3' miRNA: 3'- -GCGa--UgCAGCUGGUGCGGCu-GUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15460 | 0.69 | 0.43503 |
Target: 5'- aCGCUGaacaacucCGUCGACCuuGCCGACGu--- -3' miRNA: 3'- -GCGAU--------GCAGCUGGugCGGCUGUgacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 32253 | 0.69 | 0.444819 |
Target: 5'- gCGCUcaACGUCGACCGgGUcaCGACGCc-- -3' miRNA: 3'- -GCGA--UGCAGCUGGUgCG--GCUGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 3061 | 0.69 | 0.45473 |
Target: 5'- gGCUucUGUCGgagacgauuGCCACGCUGcCGCUGAg -3' miRNA: 3'- gCGAu-GCAGC---------UGGUGCGGCuGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 29384 | 0.69 | 0.46476 |
Target: 5'- gCGUgccCGUCGu---CGCCGACGCUGAc -3' miRNA: 3'- -GCGau-GCAGCugguGCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 39965 | 0.69 | 0.468804 |
Target: 5'- aGCUuccCcUUGACCaaugguuccccgaagACGCCGACGCUGAc -3' miRNA: 3'- gCGAu--GcAGCUGG---------------UGCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 8775 | 0.69 | 0.474903 |
Target: 5'- gCGC-ACGUcCGACCACGUCaacccccugaaGugACUGAc -3' miRNA: 3'- -GCGaUGCA-GCUGGUGCGG-----------CugUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 20470 | 0.69 | 0.485156 |
Target: 5'- gGCgACGUCGGCCGa-CCGGCGCg-- -3' miRNA: 3'- gCGaUGCAGCUGGUgcGGCUGUGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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