miRNA: 3'- -CCACUUCGAAGAAGCUCGGGCCCCGA- -5'
miRNA: 3'- ccaCU-UC-GAAGA--AGCU-CGGGCCCCGa -5'
miRNA: 3'- ccaCUUCGa-----AGAAGCuCgGGCCCCGA- -5'
miRNA: 3'- -CCaCUUCGaa----GAAGCuCgGGCCCCGA- -5'
miRNA: 3'- cCACUUCGaaGAa-----GCuCGGGC-CCCGA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8208 | 3' | -56.7 | NC_001978.2 | + | 33003 | 1.1 | 0.000418 |
|
Target: 5'- gGGUGAAGCUUCUUCGAGCCCGGGGCUa -3' miRNA: 3'- -CCACUUCGAAGAAGCUCGGGCCCCGA- -5' |
|||||||
| 8208 | 3' | -56.7 | NC_001978.2 | + | 6005 | 0.71 | 0.272555 |
|
Target: 5'- --cGAcGGuCUUCUugUCGAcGCCCGGGGCg -3' miRNA: 3'- ccaCU-UC-GAAGA--AGCU-CGGGCCCCGa -5' |
|||||||
| 8208 | 3' | -56.7 | NC_001978.2 | + | 18899 | 0.7 | 0.350038 |
|
Target: 5'- --cGAAGCgcgcgcUCUUCGuGaCCGGGGCUu -3' miRNA: 3'- ccaCUUCGa-----AGAAGCuCgGGCCCCGA- -5' |
|||||||
| 8208 | 3' | -56.7 | NC_001978.2 | + | 24296 | 0.67 | 0.503231 |
|
Target: 5'- gGGcGGAGCaaugcgCUUCGuG-CCGGGGCUu -3' miRNA: 3'- -CCaCUUCGaa----GAAGCuCgGGCCCCGA- -5' |
|||||||
| 8208 | 3' | -56.7 | NC_001978.2 | + | 21321 | 0.66 | 0.56791 |
|
Target: 5'- aGUGAAGCccCUgggacaCGcGCCCGgGGGCUu -3' miRNA: 3'- cCACUUCGaaGAa-----GCuCGGGC-CCCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home