miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8209 3' -55 NC_001978.2 + 7345 0.66 0.67572
Target:  5'- gGCUCGAagGUcgccuucaagcaccuGGGUuGCGUGGcgACCGAa -3'
miRNA:   3'- -CGAGCUaaCA---------------CCCGuCGCGCU--UGGCU- -5'
8209 3' -55 NC_001978.2 + 12881 0.66 0.671259
Target:  5'- gGCUCGAUUGaguacGGGUgcgacGGCGUGAuugCGAa -3'
miRNA:   3'- -CGAGCUAACa----CCCG-----UCGCGCUug-GCU- -5'
8209 3' -55 NC_001978.2 + 36092 0.66 0.648877
Target:  5'- cGC-CGAcaccUGGGC-GCGCGAggaaGCCGAa -3'
miRNA:   3'- -CGaGCUaac-ACCCGuCGCGCU----UGGCU- -5'
8209 3' -55 NC_001978.2 + 22194 0.66 0.637656
Target:  5'- uGCUCGAc-GUaGGGCgucagaucAGCGCGcacacGGCCGAc -3'
miRNA:   3'- -CGAGCUaaCA-CCCG--------UCGCGC-----UUGGCU- -5'
8209 3' -55 NC_001978.2 + 33834 0.66 0.63092
Target:  5'- cGCUCGAcUGUcGGGCcgacggcguuacccgGGUGCcGACCGu -3'
miRNA:   3'- -CGAGCUaACA-CCCG---------------UCGCGcUUGGCu -5'
8209 3' -55 NC_001978.2 + 32688 0.67 0.61521
Target:  5'- --cCGGUUGUaGGCAGCGcCGGACaCGc -3'
miRNA:   3'- cgaGCUAACAcCCGUCGC-GCUUG-GCu -5'
8209 3' -55 NC_001978.2 + 7971 0.67 0.604004
Target:  5'- aGCUUGAUUGcGGGCGucacgccgucGCcCGggUCGAg -3'
miRNA:   3'- -CGAGCUAACaCCCGU----------CGcGCuuGGCU- -5'
8209 3' -55 NC_001978.2 + 40143 0.67 0.570577
Target:  5'- cGCuUCGAUcacGUGGGCgaAGcCGCcGACCGAc -3'
miRNA:   3'- -CG-AGCUAa--CACCCG--UC-GCGcUUGGCU- -5'
8209 3' -55 NC_001978.2 + 33404 0.68 0.51601
Target:  5'- -gUCGAUUGcc-GCAGCGuCGAGCUGAa -3'
miRNA:   3'- cgAGCUAACaccCGUCGC-GCUUGGCU- -5'
8209 3' -55 NC_001978.2 + 28828 0.69 0.484287
Target:  5'- --gCGcgUGUuGGCAGCGCucGCCGAc -3'
miRNA:   3'- cgaGCuaACAcCCGUCGCGcuUGGCU- -5'
8209 3' -55 NC_001978.2 + 16547 0.69 0.47392
Target:  5'- cGCgcgUGGUUG-GGGCGGCGUuucggcuGACCGAu -3'
miRNA:   3'- -CGa--GCUAACaCCCGUCGCGc------UUGGCU- -5'
8209 3' -55 NC_001978.2 + 4838 0.7 0.443514
Target:  5'- cGCUCuucaGUcGGCGGCGCGAacucACCGAu -3'
miRNA:   3'- -CGAGcuaaCAcCCGUCGCGCU----UGGCU- -5'
8209 3' -55 NC_001978.2 + 8602 0.7 0.414235
Target:  5'- gGCgCGAagcaucgGGGCacGGCGCGAACCGGc -3'
miRNA:   3'- -CGaGCUaaca---CCCG--UCGCGCUUGGCU- -5'
8209 3' -55 NC_001978.2 + 30010 0.73 0.27266
Target:  5'- -gUCGGcgGacUGGGCGGCGCGAAUCGu -3'
miRNA:   3'- cgAGCUaaC--ACCCGUCGCGCUUGGCu -5'
8209 3' -55 NC_001978.2 + 4606 0.86 0.035815
Target:  5'- uGCUCGAcgGUGGGCAGCGaCGGGCgGAc -3'
miRNA:   3'- -CGAGCUaaCACCCGUCGC-GCUUGgCU- -5'
8209 3' -55 NC_001978.2 + 33302 1.11 0.000524
Target:  5'- aGCUCGAUUGUGGGCAGCGCGAACCGAa -3'
miRNA:   3'- -CGAGCUAACACCCGUCGCGCUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.