miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8209 5' -54 NC_001978.2 + 10137 0.66 0.682001
Target:  5'- -gUCaAGCgCGACG--GCGGUAAUCGAa -3'
miRNA:   3'- gaAG-UCGaGCUGCgaCGCCGUUAGCU- -5'
8209 5' -54 NC_001978.2 + 34691 0.66 0.670715
Target:  5'- -gUCGGCUCGAacccggcaaGCUG-GGCGuucaGUCGGu -3'
miRNA:   3'- gaAGUCGAGCUg--------CGACgCCGU----UAGCU- -5'
8209 5' -54 NC_001978.2 + 15632 0.67 0.663924
Target:  5'- --aCGGCUCGAcgguuccggcggcuuCGCUGgGGC--UCGAc -3'
miRNA:   3'- gaaGUCGAGCU---------------GCGACgCCGuuAGCU- -5'
8209 5' -54 NC_001978.2 + 23867 0.67 0.648039
Target:  5'- --cCGGgUCGAgCGCUGCcacuagucGGCAAUCGc -3'
miRNA:   3'- gaaGUCgAGCU-GCGACG--------CCGUUAGCu -5'
8209 5' -54 NC_001978.2 + 19313 0.67 0.636672
Target:  5'- gCUUCAugGCUucccCGGCGUgcgGCGGCAAcCGGg -3'
miRNA:   3'- -GAAGU--CGA----GCUGCGa--CGCCGUUaGCU- -5'
8209 5' -54 NC_001978.2 + 4597 0.67 0.625301
Target:  5'- cCUUCcgcguGCUCGACGgUG-GGCAG-CGAc -3'
miRNA:   3'- -GAAGu----CGAGCUGCgACgCCGUUaGCU- -5'
8209 5' -54 NC_001978.2 + 12352 0.68 0.591267
Target:  5'- --aCGGC-CGgacaACGCgGCGGCAAUCGc -3'
miRNA:   3'- gaaGUCGaGC----UGCGaCGCCGUUAGCu -5'
8209 5' -54 NC_001978.2 + 9796 0.68 0.557562
Target:  5'- -gUCGGCcguugaGACGCUG-GGCAagGUCGAc -3'
miRNA:   3'- gaAGUCGag----CUGCGACgCCGU--UAGCU- -5'
8209 5' -54 NC_001978.2 + 8669 0.68 0.546442
Target:  5'- gCUUCAGCUuccCGACGU--CGGCGGgcUCGAu -3'
miRNA:   3'- -GAAGUCGA---GCUGCGacGCCGUU--AGCU- -5'
8209 5' -54 NC_001978.2 + 32983 0.69 0.512461
Target:  5'- gCUUCAGgCguaCGACGCUGgGGUGAagcuucuUCGAg -3'
miRNA:   3'- -GAAGUC-Ga--GCUGCGACgCCGUU-------AGCU- -5'
8209 5' -54 NC_001978.2 + 22263 0.7 0.471016
Target:  5'- ---uGGCUCGACGCcGaCGGCAAccCGAc -3'
miRNA:   3'- gaagUCGAGCUGCGaC-GCCGUUa-GCU- -5'
8209 5' -54 NC_001978.2 + 30639 0.7 0.471016
Target:  5'- aCUcCGGCg-GACGUUGCGGCGcUUGAa -3'
miRNA:   3'- -GAaGUCGagCUGCGACGCCGUuAGCU- -5'
8209 5' -54 NC_001978.2 + 33371 0.71 0.391818
Target:  5'- gUUCGGUUCG-CGCUGCccaCAAUCGAg -3'
miRNA:   3'- gAAGUCGAGCuGCGACGcc-GUUAGCU- -5'
8209 5' -54 NC_001978.2 + 16433 0.74 0.282292
Target:  5'- uCUUCGGaaCGGCGCUGggaacguUGGCAAUCGGc -3'
miRNA:   3'- -GAAGUCgaGCUGCGAC-------GCCGUUAGCU- -5'
8209 5' -54 NC_001978.2 + 33336 1.09 0.000907
Target:  5'- cCUUCAGCUCGACGCUGCGGCAAUCGAc -3'
miRNA:   3'- -GAAGUCGAGCUGCGACGCCGUUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.