Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 30386 | 0.66 | 0.695565 |
Target: 5'- cCGGCUCGCGUGGcaggGUGcCGUGUcgcUCg -3' miRNA: 3'- -GCUGAGCGCGCCuga-CAU-GCGCA---AGg -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 19679 | 0.66 | 0.684634 |
Target: 5'- aGGCUCGCGCgcugggcauGGACUGggccgaaGCGcUCg -3' miRNA: 3'- gCUGAGCGCG---------CCUGACaug----CGCaAGg -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 30021 | 0.66 | 0.684634 |
Target: 5'- uCGGCaaggUCGUcgGCGGACUGggcgGCGCGaaucgUCUc -3' miRNA: 3'- -GCUG----AGCG--CGCCUGACa---UGCGCa----AGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 30435 | 0.66 | 0.684634 |
Target: 5'- gCGAgcCGgGCGG-CUucgGCGCGUUCCu -3' miRNA: 3'- -GCUgaGCgCGCCuGAca-UGCGCAAGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 37241 | 0.67 | 0.651581 |
Target: 5'- aGGCaUCGgGCGGACg--GCGC--UCCg -3' miRNA: 3'- gCUG-AGCgCGCCUGacaUGCGcaAGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 26909 | 0.67 | 0.636083 |
Target: 5'- cCGACUCGCcuuCGGACgccaugacgagGCGCGaaCCa -3' miRNA: 3'- -GCUGAGCGc--GCCUGaca--------UGCGCaaGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 25639 | 0.68 | 0.574285 |
Target: 5'- gGACgggcaGCGCuGGGCgccGUaugGCGUGUUCCg -3' miRNA: 3'- gCUGag---CGCG-CCUGa--CA---UGCGCAAGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 21507 | 0.69 | 0.530969 |
Target: 5'- cCGACgugcacccCGUGCGcugaGGCUGUACGCGacgCCu -3' miRNA: 3'- -GCUGa-------GCGCGC----CUGACAUGCGCaa-GG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 35267 | 0.69 | 0.530969 |
Target: 5'- gCGAgaCGCGUGaGCuUGUGCGCGgcUCCg -3' miRNA: 3'- -GCUgaGCGCGCcUG-ACAUGCGCa-AGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 36469 | 0.69 | 0.509751 |
Target: 5'- uGACgaagcugggCGCGUGGcCcGU-CGCGUUCCg -3' miRNA: 3'- gCUGa--------GCGCGCCuGaCAuGCGCAAGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 6300 | 0.69 | 0.499275 |
Target: 5'- aCGAUUCG-GUGGugUGUGCGCa---- -3' miRNA: 3'- -GCUGAGCgCGCCugACAUGCGcaagg -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 14114 | 0.72 | 0.37353 |
Target: 5'- uGACaaGCGaCGGACUcaACGCGUUCg -3' miRNA: 3'- gCUGagCGC-GCCUGAcaUGCGCAAGg -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 259 | 0.73 | 0.30757 |
Target: 5'- aCGACggggGCaGCGGACUcagcggcagcGUugGCGUUCCc -3' miRNA: 3'- -GCUGag--CG-CGCCUGA----------CAugCGCAAGG- -5' |
|||||||
8210 | 5' | -54.9 | NC_001978.2 | + | 34034 | 1.11 | 0.00068 |
Target: 5'- gCGACUCGCGCGGACUGUACGCGUUCCc -3' miRNA: 3'- -GCUGAGCGCGCCUGACAUGCGCAAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home