miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8210 5' -54.9 NC_001978.2 + 30386 0.66 0.695565
Target:  5'- cCGGCUCGCGUGGcaggGUGcCGUGUcgcUCg -3'
miRNA:   3'- -GCUGAGCGCGCCuga-CAU-GCGCA---AGg -5'
8210 5' -54.9 NC_001978.2 + 19679 0.66 0.684634
Target:  5'- aGGCUCGCGCgcugggcauGGACUGggccgaaGCGcUCg -3'
miRNA:   3'- gCUGAGCGCG---------CCUGACaug----CGCaAGg -5'
8210 5' -54.9 NC_001978.2 + 30435 0.66 0.684634
Target:  5'- gCGAgcCGgGCGG-CUucgGCGCGUUCCu -3'
miRNA:   3'- -GCUgaGCgCGCCuGAca-UGCGCAAGG- -5'
8210 5' -54.9 NC_001978.2 + 30021 0.66 0.684634
Target:  5'- uCGGCaaggUCGUcgGCGGACUGggcgGCGCGaaucgUCUc -3'
miRNA:   3'- -GCUG----AGCG--CGCCUGACa---UGCGCa----AGG- -5'
8210 5' -54.9 NC_001978.2 + 37241 0.67 0.651581
Target:  5'- aGGCaUCGgGCGGACg--GCGC--UCCg -3'
miRNA:   3'- gCUG-AGCgCGCCUGacaUGCGcaAGG- -5'
8210 5' -54.9 NC_001978.2 + 26909 0.67 0.636083
Target:  5'- cCGACUCGCcuuCGGACgccaugacgagGCGCGaaCCa -3'
miRNA:   3'- -GCUGAGCGc--GCCUGaca--------UGCGCaaGG- -5'
8210 5' -54.9 NC_001978.2 + 25639 0.68 0.574285
Target:  5'- gGACgggcaGCGCuGGGCgccGUaugGCGUGUUCCg -3'
miRNA:   3'- gCUGag---CGCG-CCUGa--CA---UGCGCAAGG- -5'
8210 5' -54.9 NC_001978.2 + 35267 0.69 0.530969
Target:  5'- gCGAgaCGCGUGaGCuUGUGCGCGgcUCCg -3'
miRNA:   3'- -GCUgaGCGCGCcUG-ACAUGCGCa-AGG- -5'
8210 5' -54.9 NC_001978.2 + 21507 0.69 0.530969
Target:  5'- cCGACgugcacccCGUGCGcugaGGCUGUACGCGacgCCu -3'
miRNA:   3'- -GCUGa-------GCGCGC----CUGACAUGCGCaa-GG- -5'
8210 5' -54.9 NC_001978.2 + 36469 0.69 0.509751
Target:  5'- uGACgaagcugggCGCGUGGcCcGU-CGCGUUCCg -3'
miRNA:   3'- gCUGa--------GCGCGCCuGaCAuGCGCAAGG- -5'
8210 5' -54.9 NC_001978.2 + 6300 0.69 0.499275
Target:  5'- aCGAUUCG-GUGGugUGUGCGCa---- -3'
miRNA:   3'- -GCUGAGCgCGCCugACAUGCGcaagg -5'
8210 5' -54.9 NC_001978.2 + 14114 0.72 0.37353
Target:  5'- uGACaaGCGaCGGACUcaACGCGUUCg -3'
miRNA:   3'- gCUGagCGC-GCCUGAcaUGCGCAAGg -5'
8210 5' -54.9 NC_001978.2 + 259 0.73 0.30757
Target:  5'- aCGACggggGCaGCGGACUcagcggcagcGUugGCGUUCCc -3'
miRNA:   3'- -GCUGag--CG-CGCCUGA----------CAugCGCAAGG- -5'
8210 5' -54.9 NC_001978.2 + 34034 1.11 0.00068
Target:  5'- gCGACUCGCGCGGACUGUACGCGUUCCc -3'
miRNA:   3'- -GCUGAGCGCGCCUGACAUGCGCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.