miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8211 3' -55.4 NC_001978.2 + 28938 0.7 0.367208
Target:  5'- aGGCGCGAaGCGcgaccggaagguguUCAaggGCGCCGgauUCGGCa -3'
miRNA:   3'- -UUGCGCUaUGC--------------AGUa--CGCGGC---AGCCG- -5'
8211 3' -55.4 NC_001978.2 + 30843 0.68 0.496664
Target:  5'- cAUGCGGUcgucacgaACGUCAcGaagGUCGUCGGCa -3'
miRNA:   3'- uUGCGCUA--------UGCAGUaCg--CGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 30923 0.68 0.496664
Target:  5'- uGACG-GGUGCGaCAugaaggcaugUGCGCCcagGUCGGCg -3'
miRNA:   3'- -UUGCgCUAUGCaGU----------ACGCGG---CAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 31367 0.66 0.628362
Target:  5'- gAAUGCugaacGGUGCugaUCAcGuCGCCGUCGGCg -3'
miRNA:   3'- -UUGCG-----CUAUGc--AGUaC-GCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 31736 0.73 0.25345
Target:  5'- cGACGCa--AUGUCAUaaaggGCGUCGUCGGCg -3'
miRNA:   3'- -UUGCGcuaUGCAGUA-----CGCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 32384 0.66 0.628362
Target:  5'- uGACGcCGucuUGCGUg--GCGCCuUCGGCu -3'
miRNA:   3'- -UUGC-GCu--AUGCAguaCGCGGcAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 32667 0.66 0.599237
Target:  5'- cACGCGAUacucguacGCGUCgagcaagggcgaaggGUucaGCGCCGUCguGGCa -3'
miRNA:   3'- uUGCGCUA--------UGCAG---------------UA---CGCGGCAG--CCG- -5'
8211 3' -55.4 NC_001978.2 + 34240 1.1 0.000581
Target:  5'- cAACGCGAUACGUCAUGCGCCGUCGGCg -3'
miRNA:   3'- -UUGCGCUAUGCAGUACGCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 34288 0.71 0.343902
Target:  5'- -uCGCGuUGCGcUCA-GCGUgGUCGGCa -3'
miRNA:   3'- uuGCGCuAUGC-AGUaCGCGgCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 35645 0.68 0.486178
Target:  5'- -uCGCGccgACGcUCAgggGCGCCGUCuccGGCu -3'
miRNA:   3'- uuGCGCua-UGC-AGUa--CGCGGCAG---CCG- -5'
8211 3' -55.4 NC_001978.2 + 37514 0.7 0.369864
Target:  5'- uGCGCGA-GCGUCGUcUGUcuuCGUCGGCg -3'
miRNA:   3'- uUGCGCUaUGCAGUAcGCG---GCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 37843 0.67 0.572523
Target:  5'- gGACGUGggGCGaaGUGCcCCuuGUCGGCg -3'
miRNA:   3'- -UUGCGCuaUGCagUACGcGG--CAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 38729 0.68 0.495611
Target:  5'- aAGCGCGAcACGUCAuagacaaugaucaUGUugaGCCGccCGGCg -3'
miRNA:   3'- -UUGCGCUaUGCAGU-------------ACG---CGGCa-GCCG- -5'
8211 3' -55.4 NC_001978.2 + 38886 0.67 0.539553
Target:  5'- cAGCGCGAauugggcgggUACGUCGgcgggaagGCGCUuaCGGCu -3'
miRNA:   3'- -UUGCGCU----------AUGCAGUa-------CGCGGcaGCCG- -5'
8211 3' -55.4 NC_001978.2 + 40264 0.67 0.583625
Target:  5'- uACGcCGcUACGUCuuccGUGCCGUCcugGGCg -3'
miRNA:   3'- uUGC-GCuAUGCAGua--CGCGGCAG---CCG- -5'
8211 3' -55.4 NC_001978.2 + 41192 0.68 0.475799
Target:  5'- cAACGCugcggcgaaGAUGCGUCGUGCuauCCGUaaGGCa -3'
miRNA:   3'- -UUGCG---------CUAUGCAGUACGc--GGCAg-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.